ENSDARG00000031954


Danio rerio

Features
Gene ID: ENSDARG00000031954
  
Biological name :rbck1
  
Synonyms : RanBP-type and C3HC4-type zinc finger containing 1 / rbck1
  
Possible biological names infered from orthology : Q9BYM8 / Q9WUB0 / RANBP2-type and C3HC4-type zinc finger containing 1
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 10145098
Gene end: 10165446
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000047443
Ensembl peptide - ENSDARP00000113670
Ensembl peptide - ENSDARP00000119127
Ensembl peptide - ENSDARP00000140102
NCBI entrez gene - 431715     See in Manteia.
RefSeq - NM_001002168
RefSeq - XM_021469313
RefSeq - XM_021469314
RefSeq Peptide - NP_001002168
swissprot - Q1LXG6
swissprot - Q6GMF9
swissprot - F1QRZ7
ZFIN ID - ZDB-GENE-040704-3
Ensembl - ENSDARG00000031954
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBCK1ENSG00000125826Homo sapiens
 Rbck1ENSMUSG00000027466Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
A9JTG5 / shrprbck1r / sharpin and rbck1 related / Q9H0F6* / Q91WA6* / SHARPIN* / SHANK associated RH domain interactor*ENSDARG0000005987145
sharpin / SHANK-associated RH domain interacting protein / Q91WA6* / Q9H0F6* / SHANK associated RH domain interactor*ENSDARG0000007699513


Protein motifs (from Interpro)
Interpro ID Name
 IPR000626  Ubiquitin domain
 IPR001841  Zinc finger, RING-type
 IPR001876  Zinc finger, RanBP2-type
 IPR002867  IBR domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048701 embryonic cranial skeleton morphogenesis IMP
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Regulation of TNFR1 signaling
TNFR1-induced NFkappaB signaling pathway
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001273 ventral mandibular arch ventral mandibular arch decreased length , abnormal
Show

 ZFA:0001306 pharyngeal arch pharyngeal arch decreased size , abnormal
pharyngeal arch disorganized , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000017037 ikbkg / inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma / Q9Y6K9* / O88522* / NF-kappa-B essential modulator * / inhibitor of nuclear factor kappa B kinase subunit gamma*  / reaction / complex
 ENSDARG00000076995 sharpin / SHANK-associated RH domain interacting protein / Q91WA6* / Q9H0F6* / SHANK associated RH domain interactor*  / complex
 ENSDARG00000059871 A9JTG5 / shrprbck1r / sharpin and rbck1 related / Q9H0F6* / Q91WA6* / SHARPIN* / SHANK associated RH domain interactor*  / complex
 ENSDARG00000079123 ikbkb / inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta / O14920* / inhibitor of kappaB kinase beta* / inhibitor of nuclear factor kappa B kinase subunit beta*  / reaction / complex






 

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