ENSG00000125826


Homo sapiens

Features
Gene ID: ENSG00000125826
  
Biological name :RBCK1
  
Synonyms : Q9BYM8 / RANBP2-type and C3HC4-type zinc finger containing 1 / RBCK1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: 1
Band: p13
Gene start: 407498
Gene end: 430966
  
Corresponding Affymetrix probe sets: 207713_s_at (Human Genome U133 Plus 2.0 Array)   221827_at (Human Genome U133 Plus 2.0 Array)   229920_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000387799
Ensembl peptide - ENSP00000383106
Ensembl peptide - ENSP00000393841
Ensembl peptide - ENSP00000491402
Ensembl peptide - ENSP00000417173
Ensembl peptide - ENSP00000415080
Ensembl peptide - ENSP00000405288
Ensembl peptide - ENSP00000254960
Ensembl peptide - ENSP00000348632
Ensembl peptide - ENSP00000371616
Ensembl peptide - ENSP00000371649
NCBI entrez gene - 10616     See in Manteia.
OMIM - 610924
RefSeq - XM_017027595
RefSeq - NM_001323956
RefSeq - NM_001323958
RefSeq - NM_001323960
RefSeq - NM_006462
RefSeq - NM_031229
RefSeq - XM_005260645
RefSeq - XM_011529137
RefSeq - XM_011529138
RefSeq - XM_011529139
RefSeq - XM_011529140
RefSeq - XM_017027594
RefSeq Peptide - NP_006453
RefSeq Peptide - NP_112506
RefSeq Peptide - NP_001310887
RefSeq Peptide - NP_001310889
RefSeq Peptide - NP_001310885
swissprot - G3XAG9
swissprot - H0Y4S7
swissprot - Q5JWR1
swissprot - Q9BYM8
swissprot - A6PVJ5
swissprot - B4DML5
swissprot - A6PVK0
swissprot - A6PVJ7
swissprot - A6PVJ6
Ensembl - ENSG00000125826
  
Related genetic diseases (OMIM): 615895 - Polyglucosan body myopathy 1 with or without immunodeficiency, 615895
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbck1ENSDARG00000031954Danio rerio
 Rbck1ENSMUSG00000027466Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9H0F6 / SHARPIN / SHANK associated RH domain interactorENSG0000017952618


Protein motifs (from Interpro)
Interpro ID Name
 IPR000626  Ubiquitin domain
 IPR001841  Zinc finger, RING-type
 IPR001876  Zinc finger, RanBP2-type
 IPR002867  IBR domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR026261  RanBP-type and C3HC4-type zinc finger-containing protein 1
 IPR027370  RING-type zinc-finger, LisH dimerisation motif
 IPR029071  Ubiquitin-like domain superfamily
 IPR036443  Zinc finger, RanBP2-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IDA
 biological_processGO:0007249 I-kappaB kinase/NF-kappaB signaling TAS
 biological_processGO:0010803 regulation of tumor necrosis factor-mediated signaling pathway TAS
 biological_processGO:0016032 viral process IEA
 biological_processGO:0032088 negative regulation of NF-kappaB transcription factor activity IDA
 biological_processGO:0043065 positive regulation of apoptotic process IEA
 biological_processGO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling IDA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IMP
 biological_processGO:0050852 T cell receptor signaling pathway IDA
 biological_processGO:0051092 positive regulation of NF-kappaB transcription factor activity IDA
 biological_processGO:0060546 negative regulation of necroptotic process IEA
 biological_processGO:0097039 protein linear polyubiquitination IDA
 biological_processGO:2001238 positive regulation of extrinsic apoptotic signaling pathway IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0071797 LUBAC complex IDA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity TAS
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0043130 ubiquitin binding IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Regulation of TNFR1 signaling
TNFR1-induced NFkappaB signaling pathway
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000964 Eczema "Eczema is a form of dermatitis. The term eczema is broadly applied to a range of persistent skin conditions and can be related to a number of underlying conditions. Manifestations of eczema can include dryness and recurring skin rashes with redness, skin edema, itching and dryness, crusting, flaking, blistering, cracking, oozing, or bleeding." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001510 Growth retardation 
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 HP:0001644 Dilated cardiomyopathy 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002716 Lymphadenopathy 
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 HP:0002719 Recurrent infections 
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 HP:0002721 Immunodeficiency 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003326 Myalgia "A tendency to experience muscle pain." [HPO:curators]
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 HP:0003676 Progressive disorder 
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 HP:0003701 Proximal muscle weakness "A lack of strength of the proximal muscles." [HPO:curators]
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 HP:0003828 Variable expressivity 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000092098 RNF31 / Q96EP0 / ring finger protein 31  / complex
 ENSG00000104365 IKBKB / O14920 / inhibitor of nuclear factor kappa B kinase subunit beta  / reaction / complex
 ENSG00000213341 CHUK / O15111 / conserved helix-loop-helix ubiquitous kinase  / complex / reaction
 ENSG00000269335 IKBKG / Q9Y6K9 / inhibitor of nuclear factor kappa B kinase subunit gamma  / complex / reaction
 ENSG00000154124 OTULIN / Q96BN8 / OTU deubiquitinase with linear linkage specificity  / complex / reaction
 ENSG00000179526 Q9H0F6 / SHARPIN / SHANK associated RH domain interactor  / complex






 

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