ENSDARG00000033760


Danio rerio

Features
Gene ID: ENSDARG00000033760
  
Biological name :pmelb
  
Synonyms : pmelb / premelanosome protein b
  
Possible biological names infered from orthology : P40967 / PMEL / premelanosome protein
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 35672542
Gene end: 35690336
  
Corresponding Affymetrix probe sets: Dr.11274.1.A1_at (Zebrafish Array)   NM_001033918_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000046267
Ensembl peptide - ENSDARP00000114271
NCBI entrez gene - 562810     See in Manteia.
RefSeq - NM_001033918
RefSeq - XM_005162378
RefSeq Peptide - NP_001029090
swissprot - B8A520
swissprot - B8A519
ZFIN ID - ZDB-GENE-050912-2
Ensembl - ENSDARG00000033760
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PMELENSGALG00000035350Gallus gallus
 PMELENSG00000185664Homo sapiens
 PmelENSMUSG00000025359Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pmela / premelanosome protein a / PMEL* / P40967* / premelanosome protein*ENSDARG0000009129847
gpnmb / glycoprotein (transmembrane) nmb / Q14956* / Q99P91* / glycoprotein nmb* / Transmembrane glycoprotein NMB *ENSDARG0000006268822


Protein motifs (from Interpro)
Interpro ID Name
 IPR000601  PKD domain
 IPR013783  Immunoglobulin-like fold
 IPR022409  PKD/Chitinase domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0032438 melanosome organization IGI
 biological_processGO:0048066 developmental pigmentation IBA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0042470 melanosome IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000144 retinal pigmented epithelium retinal pigmented epithelium melanosome morphology , abnormal
retinal pigmented epithelium melanosome decreased amount , abnormal
Show

 ZFA:0009127 photoreceptor cell photoreceptor cell photoreceptor outer segment morphology , abnormal
photoreceptor cell photoreceptor outer segment structure , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr