ENSDARG00000033855


Danio rerio

Features
Gene ID: ENSDARG00000033855
  
Biological name :cnot9
  
Synonyms : CCR4-NOT transcription complex subunit 9 / cnot9 / Q6NWL4
  
Possible biological names infered from orthology : Q92600 / Q9JKY0
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 12752286
Gene end: 12763350
  
Corresponding Affymetrix probe sets: Dr.5470.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000113790
NCBI entrez gene - 406632     See in Manteia.
swissprot - Q6NWL4
ZFIN ID - ZDB-GENE-030131-1558
Ensembl - ENSDARG00000033855
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CNOT9ENSGALG00000011402Gallus gallus
 CNOT9ENSG00000144580Homo sapiens
 Cnot9ENSMUSG00000026174Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007216  CCR4-NOT transcription complex subunit 9
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IBA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006402 mRNA catabolic process IEA
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:0017148 negative regulation of translation IBA
 biological_processGO:0031047 gene silencing by RNA IEA
 biological_processGO:0033147 negative regulation of intracellular estrogen receptor signaling pathway ISS
 biological_processGO:2000327 positive regulation of nuclear receptor transcription coactivator activity ISS
 cellular_componentGO:0000932 P-body IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0030014 CCR4-NOT complex IEA
 cellular_componentGO:0030015 CCR4-NOT core complex IBA


Pathways (from Reactome)
Pathway description
Deadenylation of mRNA
TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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