ENSMUSG00000026174


Mus musculus

Features
Gene ID: ENSMUSG00000026174
  
Biological name :Cnot9
  
Synonyms : CCR4-NOT transcription complex subunit 9 / Cnot9 / Q9JKY0
  
Possible biological names infered from orthology : Q92600
  
Species: Mus musculus
  
Chr. number: 1
Strand: 1
Band: C3
Gene start: 74506058
Gene end: 74530842
  
Corresponding Affymetrix probe sets: 10347386 (MoGene1.0st)   1450887_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000084466
NCBI entrez gene - 58184     See in Manteia.
MGI - MGI:1928902
RefSeq - NM_021383
RefSeq - XM_006496171
RefSeq Peptide - NP_067358
swissprot - Q9JKY0
Ensembl - ENSMUSG00000026174
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cnot9ENSDARG00000033855Danio rerio
 CNOT9ENSGALG00000011402Gallus gallus
 CNOT9ENSG00000144580Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007216  CCR4-NOT transcription complex subunit 9
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IBA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006402 mRNA catabolic process IEA
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:0017148 negative regulation of translation IBA
 biological_processGO:0019221 cytokine-mediated signaling pathway IDA
 biological_processGO:0031047 gene silencing by RNA IEA
 biological_processGO:0033138 positive regulation of peptidyl-serine phosphorylation IEA
 biological_processGO:0033147 negative regulation of intracellular estrogen receptor signaling pathway IEA
 biological_processGO:0045742 positive regulation of epidermal growth factor receptor signaling pathway IEA
 biological_processGO:2000327 positive regulation of nuclear receptor transcription coactivator activity IEA
 cellular_componentGO:0000932 P-body IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0030014 CCR4-NOT complex ISO
 cellular_componentGO:0030015 CCR4-NOT core complex IBA
 cellular_componentGO:0032991 protein-containing complex IEA
 molecular_functionGO:0005154 epidermal growth factor receptor binding IEA
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019900 kinase binding IEA
 molecular_functionGO:0019904 protein domain specific binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA


Pathways (from Reactome)
Pathway description
TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001785 edema "an accumulation of an excessive amount of watery fluid in cells or intercellular tissues" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:54065]
Show

Allelic Composition: Kdm6atm1.2Kaig/Y
Genetic Background: involves: 129S4/SvJaeSor

 MP:0002152 abnormal brain morphology "anomalous structure of or abnormal development of the brain, one of the two components of the central nervous system and the center of thought and emotion; controls coordination, bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.)" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator, http://cancerweb.ncl.ac.uk]
Show

Allelic Composition: Kdm6atm1.2Kaig/Y
Genetic Background: involves: 129S4/SvJaeSor

 MP:0003632 abnormal nervous system morphology 
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Allelic Composition: Kdm6atm1.2Kaig/Y
Genetic Background: involves: 129S4/SvJaeSor

 MP:0004073 caudal body truncation "caudal part of body truncated with anterior portion relatively normal" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Kdm6atm1.2Kaig/Y
Genetic Background: involves: 129S4/SvJaeSor

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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