ENSDARG00000035868


Danio rerio

Features
Gene ID: ENSDARG00000035868
  
Biological name :spire1a
  
Synonyms : Q1LYM3 / spire1a / spire-type actin nucleation factor 1a
  
Possible biological names infered from orthology : 1 / Q08AE8 / Q52KF3 / SPIRE1 / spire type actin nucleation factor 1
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 32979132
Gene end: 33072157
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000137931
Ensembl peptide - ENSDARP00000150485
Ensembl peptide - ENSDARP00000146084
Ensembl peptide - ENSDARP00000144015
Ensembl peptide - ENSDARP00000072529
Ensembl peptide - ENSDARP00000132998
NCBI entrez gene - 557962     See in Manteia.
RefSeq - XM_005159621
RefSeq - XM_005159622
swissprot - A0A0R4IHM3
swissprot - A0A286YA12
swissprot - Q1LYM3
swissprot - A0A0R4ITV6
ZFIN ID - ZDB-GENE-061013-119
Ensembl - ENSDARG00000035868
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000034052Gallus gallus
 ENSGALG00000013817Gallus gallus
 Q08AE8ENSG00000134278Homo sapiens
 1 ENSMUSG00000024533Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
spire1b / spire-type actin nucleation factor 1b / Q08AE8* / SPIRE1* / spire type actin nucleation factor 1*ENSDARG0000003844541
spire2 / spire-type actin nucleation factor 2 / 2 * / Q8K1S6* / Q8WWL2*ENSDARG0000000308436
zgc:114123ENSDARG0000004495618


Protein motifs (from Interpro)
Interpro ID Name
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR011019  KIND domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR029901  Protein Spire
 IPR029905  Protein Spire1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0045010 actin nucleation IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030659 cytoplasmic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0003779 actin binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr