ENSDARG00000036344


Danio rerio

Features
Gene ID: ENSDARG00000036344
  
Biological name :calb2b
  
Synonyms : calb2b / calbindin 2b
  
Possible biological names infered from orthology : CALB2 / calbindin 2 / Calretinin / P22676 / Q08331
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 24681278
Gene end: 24699985
  
Corresponding Affymetrix probe sets: Dr.11068.1.A1_at (Zebrafish Array)   NM_200711_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000052801
NCBI entrez gene - 393684     See in Manteia.
RefSeq - NM_200711
RefSeq Peptide - NP_957005
swissprot - F1QUS0
ZFIN ID - ZDB-GENE-040426-1668
Ensembl - ENSDARG00000036344
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CALB2ENSGALG00000026903Gallus gallus
 CALB2ENSG00000172137Homo sapiens
 Calb2ENSMUSG00000003657Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
calb2a / calbindin 2a / CALB2* / Q08331* / P22676* / calbindin 2* / Calretinin *ENSDARG0000004106281
calb1 / calbindin 1 / P05937* / P12658* / Calbindin *ENSDARG0000003159858
scgn / Q5XJX1 / secretagogin, EF-hand calcium binding protein / O76038*ENSDARG0000005873236


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site
 IPR029646  Calretinin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0051480 regulation of cytosolic calcium ion concentration IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005829 cytosol IBA
 cellular_componentGO:0043005 neuron projection IBA
 cellular_componentGO:0045202 synapse IBA
 molecular_functionGO:0005509 calcium ion binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr