ENSDARG00000058732


Danio rerio

Features
Gene ID: ENSDARG00000058732
  
Biological name :scgn
  
Synonyms : Q5XJX1 / scgn / secretagogin, EF-hand calcium binding protein
  
Possible biological names infered from orthology : O76038 / Q91WD9 / Secretagogin
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 6356460
Gene end: 6377672
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000076090
NCBI entrez gene - 573010     See in Manteia.
RefSeq - NM_001005776
RefSeq Peptide - NP_001005776
swissprot - Q5XJX1
ZFIN ID - ZDB-GENE-041010-82
Ensembl - ENSDARG00000058732
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SCGNENSGALG00000013598Gallus gallus
 SCGNENSG00000079689Homo sapiens
 ScgnENSMUSG00000021337Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
calb2a / calbindin 2a / CALB2* / Q08331* / P22676* / calbindin 2* / Calretinin *ENSDARG0000004106238
calb1 / calbindin 1 / P05937* / P12658* / Calbindin *ENSDARG0000003159837
calb2b / calbindin 2b / CALB2* / Q08331* / P22676* / calbindin 2* / Calretinin *ENSDARG0000003634436


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007420 brain development IMP
 biological_processGO:0051480 regulation of cytosolic calcium ion concentration IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IBA
 cellular_componentGO:0043005 neuron projection IBA
 cellular_componentGO:0045202 synapse IBA
 molecular_functionGO:0005509 calcium ion binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain decreased size , abnormal
brain edematous , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0001094 whole organism whole organism anatomical axis decreased length , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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