ENSG00000079689


Homo sapiens

Features
Gene ID: ENSG00000079689
  
Biological name :SCGN
  
Synonyms : O76038 / SCGN / secretagogin, EF-hand calcium binding protein
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: p22.2
Gene start: 25652201
Gene end: 25701783
  
Corresponding Affymetrix probe sets: 205697_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000333933
Ensembl peptide - ENSP00000367197
Ensembl peptide - ENSP00000484392
NCBI entrez gene - 10590     See in Manteia.
OMIM - 609202
RefSeq - XM_017010181
RefSeq - NM_006998
RefSeq Peptide - NP_008929
swissprot - O76038
swissprot - Q96P10
Ensembl - ENSG00000079689
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scgnENSDARG00000058732Danio rerio
 SCGNENSGALG00000013598Gallus gallus
 ScgnENSMUSG00000021337Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CALB2 / P22676 / calbindin 2ENSG0000017213736
CALB1 / P05937 / calbindin 1ENSG0000010432735


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site
 IPR035798  Secretagogin, EF-hand domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 biological_processGO:0051480 regulation of cytosolic calcium ion concentration IBA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm NAS
 cellular_componentGO:0005829 cytosol IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030658 transport vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0043005 neuron projection IBA
 cellular_componentGO:0045202 synapse IBA
 molecular_functionGO:0005509 calcium ion binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr