ENSDARG00000036386


Danio rerio

Features
Gene ID: ENSDARG00000036386
  
Biological name :rbm4.1
  
Synonyms : Q6IQ97 / rbm4.1 / RNA binding motif protein 4.1
  
Possible biological names infered from orthology : Gm21992 / Q8C7Q4 / Q8VE92 / Q9BQ04 / Q9BWF3 / RBM14-RBM4 / RBM14-RBM4 readthrough / RBM4 / RBM4B / RNA binding motif protein 4 / RNA binding motif protein 4B / RNA-binding protein 4B
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 22801465
Gene end: 22806803
  
Corresponding Affymetrix probe sets: Dr.21594.1.A1_at (Zebrafish Array)   Dr.8682.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000052861
Ensembl peptide - ENSDARP00000142868
NCBI entrez gene - 573001     See in Manteia.
RefSeq - NM_199705
RefSeq - XM_009303078
RefSeq Peptide - NP_955999
swissprot - A0A1D5NSQ1
swissprot - Q6IQ97
swissprot - A9JT29
ZFIN ID - ZDB-GENE-030131-3902
Ensembl - ENSDARG00000036386
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBM14-RBM4ENSG00000248643Homo sapiens
 RBM4ENSG00000173933Homo sapiens
 RBM4BENSG00000173914Homo sapiens
 Gm21992ENSMUSG00000096370Mus musculus
 Rbm4ENSMUSG00000094936Mus musculus
 Rbm4bENSMUSG00000033760Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbm4.2 / RNA binding motif protein 4.2 / RBM4* / RBM4B* / Q9BWF3* / Q9BQ04* / Q8VE92* / Q8C7Q4* / Gm21992* / RBM14-RBM4* / RBM14-RBM4 readthrough* / RNA-binding protein 4B * / RNA binding m...ENSDARG0000005508041
rbm4.3 / RNA binding motif protein 4.3 / RBM4* / RBM4B* / Q9BWF3* / Q9BQ04* / Q8VE92* / Q8C7Q4* / Gm21992* / RBM14-RBM4* / RBM14-RBM4 readthrough* / RNA-binding protein 4B * / RNA binding m...ENSDARG0000002212934
zgc:77262ENSDARG0000004454523
rbm14a / RNA binding motif protein 14a / RBM14* / Q96PK6* / Q8C2Q3* / RNA-binding protein 14 * / RNA binding motif protein 14*ENSDARG0000001272323
rbm14b / RNA binding motif protein 14b / RBM14* / Q96PK6* / Q8C2Q3* / RNA-binding protein 14 * / RNA binding motif protein 14*ENSDARG0000010383421


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR001878  Zinc finger, CCHC-type
 IPR034897  RBM4, RNA recognition motif 1
 IPR034898  RBM4, RNA recognition motif 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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