ENSDARG00000036869


Danio rerio

Features
Gene ID: ENSDARG00000036869
  
Biological name :tcf21
  
Synonyms : tcf21 / transcription factor 21
  
Possible biological names infered from orthology : O35437 / O43680
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 31554269
Gene end: 31555696
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000053538
NCBI entrez gene - 558148     See in Manteia.
RefSeq - NM_001037681
RefSeq Peptide - NP_001032770
swissprot - F1QH39
ZFIN ID - ZDB-GENE-051113-88
Ensembl - ENSDARG00000036869
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TCF21ENSGALG00000029024Gallus gallus
 TCF21ENSG00000118526Homo sapiens
 Tcf21ENSMUSG00000045680Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
msc / musculin (activated B-cell factor-1) / O60682* / musculin*ENSDARG0000011001649
TCF24 / transcription factor 24 / Q7RTU0*ENSDARG0000008694424
tcf23 / transcription factor 23 / Q7RTU1* / Q9JLR5*ENSDARG0000008738122


Protein motifs (from Interpro)
Interpro ID Name
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000369 intermandibularis intermandibularis hypoplastic , abnormal
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 ZFA:0000673 hypobranchial artery hypobranchial artery absent , abnormal
hypobranchial artery shape , abnormal
hypobranchial artery detached from lateral dorsal aorta , abnormal
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 ZFA:0001267 cranial vasculature cranial vasculature absent , abnormal
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 ZFA:0001307 pharyngeal musculature pharyngeal musculature absent , abnormal
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 ZFA:0001652 head muscle head muscle absent , abnormal
head muscle hypoplastic , abnormal
head muscle aplastic/hypoplastic , abnormal
Show

 ZFA:0005003 pharyngeal vasculature pharyngeal vasculature absent , abnormal
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 ZFA:0005007 aortic arch 3 aortic arch 3 decreased amount , abnormal
aortic arch 3 blood vessel lumenization decreased occurrence , abnormal
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 ZFA:0005008 aortic arch 4 aortic arch 4 decreased amount , abnormal
aortic arch 4 blood vessel lumenization decreased occurrence , abnormal
Show

 ZFA:0005009 aortic arch 5 aortic arch 5 decreased amount , abnormal
aortic arch 5 blood vessel lumenization decreased occurrence , abnormal
Show

 ZFA:0005016 aortic arch 6 aortic arch 6 decreased amount , abnormal
aortic arch 6 blood vessel lumenization arrested , abnormal
Show

 ZFA:0007051 interhyoideus interhyoideus hypoplastic , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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