ENSDARG00000036995


Danio rerio

Features
Gene ID: ENSDARG00000036995
  
Biological name :lsm6
  
Synonyms : lsm6 / LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
  
Possible biological names infered from orthology : P62312 / P62313
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 36194761
Gene end: 36204000
  
Corresponding Affymetrix probe sets: Dr.14685.1.S1_at (Zebrafish Array)   NM_001002077_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000053772
Ensembl peptide - ENSDARP00000119629
NCBI entrez gene - 415167     See in Manteia.
RefSeq - XM_005159968
RefSeq - NM_001002077
RefSeq Peptide - NP_001002077
swissprot - Q6IMW9
ZFIN ID - ZDB-GENE-040625-50
Ensembl - ENSDARG00000036995
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LSM6ENSGALG00000009985Gallus gallus
 LSM6ENSG00000164167Homo sapiens
 Lsm6ENSMUSG00000031683Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snrpf / small nuclear ribonucleoprotein polypeptide F / P62306* / P62307*ENSDARG0000010503741


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR016487  Sm-like protein Lsm6/SmF


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0030490 maturation of SSU-rRNA IBA
 cellular_componentGO:0000932 P-body IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005688 U6 snRNP IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005732 small nucleolar ribonucleoprotein complex IBA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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