ENSDARG00000105037


Danio rerio

Features
Gene ID: ENSDARG00000105037
  
Biological name :snrpf
  
Synonyms : small nuclear ribonucleoprotein polypeptide F / snrpf
  
Possible biological names infered from orthology : P62306 / P62307
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 19374683
Gene end: 19378024
  
Corresponding Affymetrix probe sets: Dr.24885.1.S1_a_at (Zebrafish Array)   NM_001003881_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000134257
NCBI entrez gene - 445404     See in Manteia.
RefSeq - NM_001003881
RefSeq Peptide - NP_001003881
swissprot - A0A0R4IHJ1
ZFIN ID - ZDB-GENE-040930-9
Ensembl - ENSDARG00000105037
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNRPFENSGALG00000011409Gallus gallus
 SNRPFENSG00000139343Homo sapiens
 SnrpfENSMUSG00000020018Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lsm6 / LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated / P62312* / P62313*ENSDARG0000003699538


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR016487  Sm-like protein Lsm6/SmF
 IPR034100  Small nuclear ribonucleoprotein F


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000387 spliceosomal snRNP assembly IEA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005732 small nucleolar ribonucleoprotein complex IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
snRNP Assembly
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000084 yolk yolk quality , abnormal
yolk grey , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000396 nervous system nervous system quality , abnormal
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 ZFA:0001094 whole organism whole organism viability , abnormal
whole organism necrotic , abnormal
Show

 ZFA:0001114 head head flat , abnormal
head decreased size , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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