ENSG00000139343


Homo sapiens

Features
Gene ID: ENSG00000139343
  
Biological name :SNRPF
  
Synonyms : P62306 / small nuclear ribonucleoprotein polypeptide F / SNRPF
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: q23.1
Gene start: 95858928
Gene end: 95903828
  
Corresponding Affymetrix probe sets: 203832_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000447127
Ensembl peptide - ENSP00000447751
Ensembl peptide - ENSP00000266735
NCBI entrez gene - 6636     See in Manteia.
OMIM - 603541
RefSeq - NM_003095
RefSeq Peptide - NP_003086
swissprot - A0A0B4J254
swissprot - F8W0W6
swissprot - P62306
Ensembl - ENSG00000139343
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpfENSDARG00000105037Danio rerio
 SNRPFENSGALG00000011409Gallus gallus
 SnrpfENSMUSG00000020018Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LSM6 / P62312 / LSM6 homolog, U6 small nuclear RNA and mRNA degradation associatedENSG0000016416738


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR016487  Sm-like protein Lsm6/SmF
 IPR034100  Small nuclear ribonucleoprotein F


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000387 spliceosomal snRNP assembly IEA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006369 termination of RNA polymerase II transcription TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008334 histone mRNA metabolic process TAS
 biological_processGO:0008380 RNA splicing IMP
 biological_processGO:0051170 import into nucleus TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005683 U7 snRNP IDA
 cellular_componentGO:0005685 U1 snRNP IDA
 cellular_componentGO:0005687 U4 snRNP IDA
 cellular_componentGO:0005689 U12-type spliceosomal complex IDA
 cellular_componentGO:0005732 small nucleolar ribonucleoprotein complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0030532 small nuclear ribonucleoprotein complex IDA
 cellular_componentGO:0034709 methylosome IDA
 cellular_componentGO:0034715 pICln-Sm protein complex IDA
 cellular_componentGO:0034719 SMN-Sm protein complex IDA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IDA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0003723 RNA binding IMP
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
SLBP independent Processing of Histone Pre-mRNAs
snRNP Assembly
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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