ENSMUSG00000020018


Mus musculus

Features
Gene ID: ENSMUSG00000020018
  
Biological name :Snrpf
  
Synonyms : P62307 / small nuclear ribonucleoprotein polypeptide F / Snrpf
  
Possible biological names infered from orthology : P62306
  
Species: Mus musculus
  
Chr. number: 10
Strand: -1
Band: C2
Gene start: 93583029
Gene end: 93589706
  
Corresponding Affymetrix probe sets: 10371981 (MoGene1.0st)   1428672_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000020203
NCBI entrez gene - 69878     See in Manteia.
MGI - MGI:1917128
RefSeq - NM_027246
RefSeq Peptide - NP_081522
swissprot - P62307
swissprot - Q497K3
Ensembl - ENSMUSG00000020018
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpfENSDARG00000105037Danio rerio
 SNRPFENSGALG00000011409Gallus gallus
 SNRPFENSG00000139343Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Lsm6 / P62313 / LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated / P62312*ENSMUSG0000003168338


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR016487  Sm-like protein Lsm6/SmF
 IPR034100  Small nuclear ribonucleoprotein F


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000387 spliceosomal snRNP assembly ISO
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing ISO
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex ISO
 cellular_componentGO:0005683 U7 snRNP IEA
 cellular_componentGO:0005685 U1 snRNP IEA
 cellular_componentGO:0005687 U4 snRNP IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA
 cellular_componentGO:0005732 small nucleolar ribonucleoprotein complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol ISS
 cellular_componentGO:0030532 small nuclear ribonucleoprotein complex IEA
 cellular_componentGO:0034709 methylosome IEA
 cellular_componentGO:0034715 pICln-Sm protein complex IEA
 cellular_componentGO:0034719 SMN-Sm protein complex IEA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
SLBP independent Processing of Histone Pre-mRNAs
snRNP Assembly
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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