ENSMUSG00000031683


Mus musculus

Features
Gene ID: ENSMUSG00000031683
  
Biological name :Lsm6
  
Synonyms : Lsm6 / LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated / P62313
  
Possible biological names infered from orthology : P62312
  
Species: Mus musculus
  
Chr. number: 8
Strand: -1
Band: C1
Gene start: 78804865
Gene end: 78821140
  
Corresponding Affymetrix probe sets: 10388745 (MoGene1.0st)   10577598 (MoGene1.0st)   10579833 (MoGene1.0st)   1431054_at (Mouse Genome 430 2.0 Array)   1437108_at (Mouse Genome 430 2.0 Array)   1437109_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000049722
Ensembl peptide - ENSMUSP00000119841
Ensembl peptide - ENSMUSP00000148221
NCBI entrez gene - 78651     See in Manteia.
MGI - MGI:1925901
RefSeq - NM_001191004
RefSeq - NM_030145
RefSeq Peptide - NP_001177933
RefSeq Peptide - NP_084421
swissprot - P62313
swissprot - Q542U7
Ensembl - ENSMUSG00000031683
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm6ENSDARG00000036995Danio rerio
 LSM6ENSGALG00000009985Gallus gallus
 LSM6ENSG00000164167Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Snrpf / P62307 / small nuclear ribonucleoprotein polypeptide F / P62306*ENSMUSG0000002001841


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR016487  Sm-like protein Lsm6/SmF


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006402 mRNA catabolic process ISO
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0030490 maturation of SSU-rRNA IBA
 cellular_componentGO:0000932 P-body IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005688 U6 snRNP IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005732 small nucleolar ribonucleoprotein complex IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0046982 protein heterodimerization activity ISO


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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