ENSGALG00000011409


Gallus gallus

Features
Gene ID: ENSGALG00000011409
  
Biological name :SNRPF
  
Synonyms : small nuclear ribonucleoprotein polypeptide F / SNRPF
  
Possible biological names infered from orthology : P62306 / P62307
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 45665312
Gene end: 45666829
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSGALP00000061684
Ensembl peptide - ENSGALP00000018594
NCBI entrez gene - 417916     See in Manteia.
RefSeq - NM_001277362
RefSeq Peptide - NP_001264291
swissprot - F1P4B8
swissprot - A0A1L1RSB5
Ensembl - ENSGALG00000011409
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpfENSDARG00000105037Danio rerio
 SNRPFENSG00000139343Homo sapiens
 SnrpfENSMUSG00000020018Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LSM6 / LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated / P62312* / P62313*ENSGALG0000000998538


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR016487  Sm-like protein Lsm6/SmF


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000387 spliceosomal snRNP assembly IEA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005683 U7 snRNP IEA
 cellular_componentGO:0005685 U1 snRNP IEA
 cellular_componentGO:0005687 U4 snRNP IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA
 cellular_componentGO:0005732 small nucleolar ribonucleoprotein complex IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0030532 small nuclear ribonucleoprotein complex IEA
 cellular_componentGO:0034709 methylosome IEA
 cellular_componentGO:0034715 pICln-Sm protein complex IEA
 cellular_componentGO:0034719 SMN-Sm protein complex IEA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
SLBP independent Processing of Histone Pre-mRNAs
snRNP Assembly
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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