ENSDARG00000037708


Danio rerio

Features
Gene ID: ENSDARG00000037708
  
Biological name :exosc10
  
Synonyms : exosc10 / exosome component 10
  
Possible biological names infered from orthology : Mus musculus exosome component 10 (Exosc10), transcript variant 5, mRNA. / P56960 / Q01780
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 14771979
Gene end: 14803801
  
Corresponding Affymetrix probe sets: Dr.2356.1.S1_at (Zebrafish Array)   NM_201089_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000122676
NCBI entrez gene - 394064     See in Manteia.
RefSeq - NM_201089
RefSeq Peptide - NP_957383
swissprot - F1Q5Q7
ZFIN ID - ZDB-GENE-040426-781
Ensembl - ENSDARG00000037708
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 EXOSC10ENSGALG00000003086Gallus gallus
 Q01780ENSG00000171824Homo sapiens
 P56960ENSMUSG00000017264Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002121  HRDC domain
 IPR002562  3"-5" exonuclease domain
 IPR010997  HRDC-like superfamily
 IPR012337  Ribonuclease H-like superfamily
 IPR012588  Exosome-associated factor Rrp6, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006139 nucleobase-containing compound metabolic process IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0044237 cellular metabolic process IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 cellular_componentGO:0000176 nuclear exosome (RNase complex) IEA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0008408 3"-5" exonuclease activity IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000093007 mphosph6 / M-phase phosphoprotein 6 / Q99547* / Q9D1Q1* / Mus musculus M phase phosphoprotein 6 (Mphosph6), transcript variant 3, mRNA.*  / complex






 

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