ENSDARG00000037919


Danio rerio

Features
Gene ID: ENSDARG00000037919
  
Biological name :rbbp6
  
Synonyms : rbbp6 / retinoblastoma binding protein 6
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase RBBP6 / P97868 / Q7Z6E9 / RB binding protein 6, ubiquitin ligase
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 35406395
Gene end: 35421194
  
Corresponding Affymetrix probe sets: Dr.11348.1.S1_at (Zebrafish Array)   Dr.11348.1.S1_x_at (Zebrafish Array)   Dr.18039.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000093768
Ensembl peptide - ENSDARP00000125662
Ensembl peptide - ENSDARP00000055265
NCBI entrez gene - 445396     See in Manteia.
RefSeq - XM_005164019
swissprot - E7EXE9
swissprot - I3IS00
swissprot - Q6DRF1
ZFIN ID - ZDB-GENE-040930-5
Ensembl - ENSDARG00000037919
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBBP6ENSGALG00000006043Gallus gallus
 RBBP6ENSG00000122257Homo sapiens
 Rbbp6ENSMUSG00000030779Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-27d5.10ENSDARG000000941968
zgc:174354ENSDARG000001139948
zgc:174353ENSDARG000001123658
zgc:174354ENSDARG000001118268
zgc:174355ENSDARG000001138898
zgc:174353ENSDARG000001150798
si:dkey-23f9.12ENSDARG000000943358
CR450764.1ENSDARG000001007548
si:dkey-23f9.13ENSDARG000000885528
si:dkey-27d5.6ENSDARG000001105918
si:ch211-156l18.6ENSDARG000000708128
si:rp71-45g20.10ENSDARG000000569077
si:rp71-45g20.4ENSDARG000000569177
si:rp71-45g20.11ENSDARG000000942917
BX005399.1ENSDARG000000947175
zgc:77614 / zgc:174461ENSDARG000001146025
zgc:77614 / zgc:174461ENSDARG000001157565
zgc:77614 / zgc:174461ENSDARG000001141815
zgc:77614 / zgc:174461ENSDARG000001095665
LO017719.1ENSDARG000001141055


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR001878  Zinc finger, CCHC-type
 IPR003613  U box domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR014891  DWNN domain
 IPR025829  Zinc knuckle CX2CX3GHX4C
 IPR033489  E3 ubiquitin-protein ligase RBBP6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0016567 protein ubiquitination IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0000084 yolk yolk circular , abnormal
yolk grey , abnormal
yolk quality , abnormal
Show

 ZFA:0000396 nervous system nervous system quality , abnormal
Show

 ZFA:0001094 whole organism whole organism viability , abnormal
Show

 ZFA:0001115 trunk trunk necrotic , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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