ENSGALG00000006043


Gallus gallus

Features
Gene ID: ENSGALG00000006043
  
Biological name :RBBP6
  
Synonyms : RB binding protein 6, ubiquitin ligase / RBBP6
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase RBBP6 / P97868 / Q7Z6E9
  
Species: Gallus gallus
  
Chr. number: 14
Strand: 1
Band:
Gene start: 6812373
Gene end: 6843749
  
Corresponding Affymetrix probe sets: Gga.13836.1.S1_s_at (Chicken Array)   Gga.14891.1.S1_s_at (Chicken Array)   Gga.19140.1.S1_at (Chicken Array)   Gga.19267.1.S1_s_at (Chicken Array)   GgaAffx.26714.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000009720
Ensembl peptide - ENSGALP00000047179
Ensembl peptide - ENSGALP00000040929
NCBI entrez gene - 416569     See in Manteia.
RefSeq - XM_015294482
swissprot - E1C4G3
swissprot - A0A1D5P3C4
swissprot - R4GFX3
Ensembl - ENSGALG00000006043
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbbp6ENSDARG00000037919Danio rerio
 RBBP6ENSG00000122257Homo sapiens
 Rbbp6ENSMUSG00000030779Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR001878  Zinc finger, CCHC-type
 IPR003613  U box domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR014891  DWNN domain
 IPR025829  Zinc knuckle CX2CX3GHX4C
 IPR033489  E3 ubiquitin-protein ligase RBBP6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0006275 regulation of DNA replication IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0035264 multicellular organism growth IEA
 biological_processGO:0048568 embryonic organ development IEA
 biological_processGO:0061053 somite development IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0032991 protein-containing complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0019901 protein kinase binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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