ENSDARG00000038121


Danio rerio

Features
Gene ID: ENSDARG00000038121
  
Biological name :si:ch211-13k12.2
  
Synonyms : si:ch211-13k12.2
  
Possible biological names infered from orthology : ELL3 / elongation factor for RNA polymerase II 3 / Q80VR2 / Q9HB65 / RNA polymerase II elongation factor ELL3
  
Species: Danio rerio
  
Chr. number: 18
Strand: -1
Band:
Gene start: 25563292
Gene end: 25646286
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000115529
Ensembl peptide - ENSDARP00000145057
Ensembl peptide - ENSDARP00000090285
Ensembl peptide - ENSDARP00000115359
NCBI entrez gene - 565819     See in Manteia.
swissprot - A2BI99
swissprot - F1Q7A8
swissprot - F1RAF7
ZFIN ID - ZDB-GENE-061207-5
Ensembl - ENSDARG00000038121
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ELL3ENSG00000128886Homo sapiens
 Ell3ENSMUSG00000027246Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ell / elongation factor RNA polymerase II / O08856* / P55199* / elongation factor for RNA polymerase II* / RNA polymerase II elongation factor ELL *ENSDARG0000000056837
ell2 / elongation factor, RNA polymerase II, 2 / O00472* / Q3UKU1* / elongation factor for RNA polymerase II 2* / RNA polymerase II elongation factor ELL2 *ENSDARG0000000625136
marveld2a / MARVEL domain containing 2a / Q3UZP0* / Q8N4S9* / MARVELD2* / MARVEL domain containing 2* / MARVEL domain-containing protein 2 *ENSDARG0000002507614
marveld2b / MARVEL domain containing 2b / Q3UZP0* / Q8N4S9* / MARVELD2* / MARVEL domain containing 2* / MARVEL domain-containing protein 2 *ENSDARG0000006165113
si:dkey-208k22.6 / OCEL1* / Q9H607* / occludin/ELL domain containing 1*ENSDARG0000006180012


Protein motifs (from Interpro)
Interpro ID Name
 IPR010844  Occludin homology domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR019464  RNA polymerase II elongation factor ELL, N-terminal
 IPR031176  ELL/occludin family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006368 transcription elongation from RNA polymerase II promoter IEA
 cellular_componentGO:0008023 transcription elongation factor complex IEA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000086670 ice2 / interactor of little elongator complex ELL subunit 2 / Q3UZ18* / Q659A1* / Little elongation complex subunit 2 * / interactor of little elongation complex ELL subunit 2*  / complex






 

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