ENSDARG00000000568


Danio rerio

Features
Gene ID: ENSDARG00000000568
  
Biological name :ell
  
Synonyms : ell / elongation factor RNA polymerase II
  
Possible biological names infered from orthology : elongation factor for RNA polymerase II / O08856 / P55199 / RNA polymerase II elongation factor ELL
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 20847580
Gene end: 20924747
  
Corresponding Affymetrix probe sets: Dr.15700.1.A1_at (Zebrafish Array)   NM_199707_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000148731
Ensembl peptide - ENSDARP00000155550
Ensembl peptide - ENSDARP00000033555
Ensembl peptide - ENSDARP00000091415
NCBI entrez gene - 325221     See in Manteia.
RefSeq - NM_199707
RefSeq Peptide - NP_956001
swissprot - A8DZ67
swissprot - Q6PEG4
ZFIN ID - ZDB-GENE-030131-3946
Ensembl - ENSDARG00000000568
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ELLENSGALG00000033513Gallus gallus
 ELLENSG00000105656Homo sapiens
 EllENSMUSG00000070002Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ell2 / elongation factor, RNA polymerase II, 2 / O00472* / Q3UKU1* / elongation factor for RNA polymerase II 2* / RNA polymerase II elongation factor ELL2 *ENSDARG0000000625139
si:ch211-13k12.2 / ELL3* / Q80VR2* / Q9HB65* / RNA polymerase II elongation factor ELL3 * / elongation factor for RNA polymerase II 3*ENSDARG0000003812133
marveld2b / MARVEL domain containing 2b / Q3UZP0* / Q8N4S9* / MARVELD2* / MARVEL domain containing 2* / MARVEL domain-containing protein 2 *ENSDARG0000006165114
marveld2a / MARVEL domain containing 2a / Q3UZP0* / Q8N4S9* / MARVELD2* / MARVEL domain containing 2* / MARVEL domain-containing protein 2 *ENSDARG0000002507613
si:dkey-208k22.6 / OCEL1* / Q9H607* / occludin/ELL domain containing 1*ENSDARG0000006180012


Protein motifs (from Interpro)
Interpro ID Name
 IPR010844  Occludin homology domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR019464  RNA polymerase II elongation factor ELL, N-terminal
 IPR031176  ELL/occludin family
 IPR031184  RNA polymerase II elongation factor ELL


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001570 vasculogenesis IMP
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006368 transcription elongation from RNA polymerase II promoter IEA
 biological_processGO:0006414 translational elongation IEA
 biological_processGO:0042795 snRNA transcription by RNA polymerase II IEA
 cellular_componentGO:0008023 transcription elongation factor complex IEA
 molecular_functionGO:0003746 translation elongation factor activity IEA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
RNA Polymerase II Pre-transcription Events
TP53 Regulates Transcription of DNA Repair Genes
RNA polymerase II transcribes snRNA genes
RNA Polymerase II Transcription Elongation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000086670 ice2 / interactor of little elongator complex ELL subunit 2 / Q3UZ18* / Q659A1* / Little elongation complex subunit 2 * / interactor of little elongation complex ELL subunit 2*  / complex






 

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