ENSGALG00000033513


Gallus gallus

Features
Gene ID: ENSGALG00000033513
  
Biological name :ELL
  
Synonyms : ELL / elongation factor for RNA polymerase II
  
Possible biological names infered from orthology : O08856 / P55199 / RNA polymerase II elongation factor ELL
  
Species: Gallus gallus
  
Chr. number: 28
Strand: 1
Band:
Gene start: 3910630
Gene end: 3946424
  
Corresponding Affymetrix probe sets: Gga.12931.1.S1_s_at (Chicken Array)   Gga.2748.1.S1_s_at (Chicken Array)   GgaAffx.25831.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000054945
Ensembl peptide - ENSGALP00000047430
NCBI entrez gene - 420124     See in Manteia.
RefSeq - XM_015300056
RefSeq - NM_001012847
RefSeq Peptide - NP_001012865
swissprot - Q5ZLS5
swissprot - A0A1D5PPY8
Ensembl - ENSGALG00000033513
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ellENSDARG00000000568Danio rerio
 ELLENSG00000105656Homo sapiens
 EllENSMUSG00000070002Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ELL2 / elongation factor for RNA polymerase II 2 / O00472* / Q3UKU1* / RNA polymerase II elongation factor ELL2 *ENSGALG0000001467850
MARVELD2 / MARVEL domain containing 2 / Q3UZP0* / Q8N4S9* / MARVEL domain-containing protein 2 *ENSGALG0000002714014
OCEL1* / Q9H607* / occludin/ELL domain containing 1*ENSGALG000000314909


Protein motifs (from Interpro)
Interpro ID Name
 IPR010844  Occludin homology domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR019464  RNA polymerase II elongation factor ELL, N-terminal
 IPR031176  ELL/occludin family
 IPR031184  RNA polymerase II elongation factor ELL


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006368 transcription elongation from RNA polymerase II promoter IEA
 biological_processGO:0010923 negative regulation of phosphatase activity IEA
 biological_processGO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter IEA
 biological_processGO:0042795 snRNA transcription by RNA polymerase II IEA
 biological_processGO:0042796 snRNA transcription by RNA polymerase III IEA
 biological_processGO:0045945 positive regulation of transcription by RNA polymerase III IEA
 cellular_componentGO:0008023 transcription elongation factor complex IEA
 cellular_componentGO:0015030 Cajal body IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0035327 transcriptionally active chromatin IEA
 cellular_componentGO:0035363 histone locus body IEA
 molecular_functionGO:0019902 phosphatase binding IEA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
RNA Polymerase II Pre-transcription Events
TP53 Regulates Transcription of DNA Repair Genes
RNA polymerase II transcribes snRNA genes
RNA Polymerase II Transcription Elongation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000008269 ZC3H6 / ZC3H4* / ZC3H8* / Q9JJ48* / Q9UPT8* / Q8BYK8* / P61129* / Q8N5P1* / zinc finger CCCH-type containing 4* / zinc finger CCCH-type containing 6* / zinc finger CCCH-type containing 8*  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr