ENSDARG00000006251


Danio rerio

Features
Gene ID: ENSDARG00000006251
  
Biological name :ell2
  
Synonyms : ell2 / elongation factor, RNA polymerase II, 2
  
Possible biological names infered from orthology : elongation factor for RNA polymerase II 2 / O00472 / Q3UKU1 / RNA polymerase II elongation factor ELL2
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 11749097
Gene end: 11774964
  
Corresponding Affymetrix probe sets: Dr.17099.1.A1_at (Zebrafish Array)   Dr.17099.2.A1_at (Zebrafish Array)   Dr.18285.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000093185
Ensembl peptide - ENSDARP00000093181
NCBI entrez gene - 322997     See in Manteia.
RefSeq - XM_021468754
RefSeq - NM_001083812
RefSeq Peptide - NP_001077281
swissprot - F1R2K8
swissprot - F1R2K7
ZFIN ID - ZDB-GENE-030131-1717
Ensembl - ENSDARG00000006251
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ELL2ENSGALG00000014678Gallus gallus
 ELL2ENSG00000118985Homo sapiens
 Ell2ENSMUSG00000001542Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ell / elongation factor RNA polymerase II / O08856* / P55199* / elongation factor for RNA polymerase II* / RNA polymerase II elongation factor ELL *ENSDARG0000000056840
si:ch211-13k12.2 / ELL3* / Q80VR2* / Q9HB65* / RNA polymerase II elongation factor ELL3 * / elongation factor for RNA polymerase II 3*ENSDARG0000003812133
marveld2b / MARVEL domain containing 2b / Q3UZP0* / Q8N4S9* / MARVELD2* / MARVEL domain containing 2* / MARVEL domain-containing protein 2 *ENSDARG0000006165113
marveld2a / MARVEL domain containing 2a / Q3UZP0* / Q8N4S9* / MARVELD2* / MARVEL domain containing 2* / MARVEL domain-containing protein 2 *ENSDARG0000002507612
si:dkey-208k22.6 / OCEL1* / Q9H607* / occludin/ELL domain containing 1*ENSDARG0000006180010


Protein motifs (from Interpro)
Interpro ID Name
 IPR010844  Occludin homology domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR019464  RNA polymerase II elongation factor ELL, N-terminal
 IPR031176  ELL/occludin family
 IPR031179  RNA polymerase II elongation factor ELL2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006368 transcription elongation from RNA polymerase II promoter IEA
 cellular_componentGO:0008023 transcription elongation factor complex IEA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000086670 ice2 / interactor of little elongator complex ELL subunit 2 / Q3UZ18* / Q659A1* / Little elongation complex subunit 2 * / interactor of little elongation complex ELL subunit 2*  / complex






 

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