ENSDARG00000038239


Danio rerio

Features
Gene ID: ENSDARG00000038239
  
Biological name :tnpo2
  
Synonyms : tnpo2 / transportin 2 (importin 3, karyopherin beta 2b)
  
Possible biological names infered from orthology : O14787 / Q99LG2 / transportin 2
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 18807006
Gene end: 18839529
  
Corresponding Affymetrix probe sets: Dr.23479.1.S1_a_at (Zebrafish Array)   Dr.23479.2.S1_at (Zebrafish Array)   Dr.23479.2.S1_x_at (Zebrafish Array)   Dr.6291.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000055756
Ensembl peptide - ENSDARP00000145049
NCBI entrez gene - 445499     See in Manteia.
swissprot - Q68EK8
ZFIN ID - ZDB-GENE-040822-16
Ensembl - ENSDARG00000038239
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TNPO2ENSG00000105576Homo sapiens
 Tnpo2ENSMUSG00000031691Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tnpo1 / transportin 1 / Q92973*ENSDARG0000003539084
LO017798.1 / TNPO2* / O14787* / transportin 2*ENSDARG0000004288749
LO017722.1 / TNPO2* / O14787* / transportin 2*ENSDARG0000011329612


Protein motifs (from Interpro)
Interpro ID Name
 IPR001494  Importin-beta, N-terminal domain
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR032878  Vacuole morphology and inheritance protein 14, Fab1-binding region


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000060 protein import into nucleus, translocation IBA
 biological_processGO:0006607 NLS-bearing protein import into nucleus IBA
 biological_processGO:0006610 ribosomal protein import into nucleus IBA
 biological_processGO:0006886 intracellular protein transport IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0031965 nuclear membrane IBA
 cellular_componentGO:0034399 nuclear periphery IBA
 molecular_functionGO:0008139 nuclear localization sequence binding IBA
 molecular_functionGO:0008536 Ran GTPase binding IEA
 molecular_functionGO:0008565 protein transporter activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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