ENSDARG00000035390


Danio rerio

Features
Gene ID: ENSDARG00000035390
  
Biological name :tnpo1
  
Synonyms : tnpo1 / transportin 1
  
Possible biological names infered from orthology : Q8BFY9 / Q92973
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 35202063
Gene end: 35252761
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000051277
NCBI entrez gene - 562607     See in Manteia.
RefSeq - XM_021471632
RefSeq - XM_685987
swissprot - F1RDR1
ZFIN ID - ZDB-GENE-080819-1
Ensembl - ENSDARG00000035390
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TNPO1ENSGALG00000015014Gallus gallus
 TNPO1ENSG00000083312Homo sapiens
 Tnpo1ENSMUSG00000009470Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tnpo2 / transportin 2 (importin 3, karyopherin beta 2b) / O14787* / Q99LG2* / transportin 2*ENSDARG0000003823984
LO017798.1 / TNPO2* / O14787* / transportin 2*ENSDARG0000004288747
LO017722.1 / TNPO2* / O14787* / transportin 2*ENSDARG0000011329610


Protein motifs (from Interpro)
Interpro ID Name
 IPR001494  Importin-beta, N-terminal domain
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000060 protein import into nucleus, translocation IBA
 biological_processGO:0006607 NLS-bearing protein import into nucleus IBA
 biological_processGO:0006610 ribosomal protein import into nucleus IBA
 biological_processGO:0006886 intracellular protein transport IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0031965 nuclear membrane IBA
 cellular_componentGO:0034399 nuclear periphery IBA
 molecular_functionGO:0008139 nuclear localization sequence binding IBA
 molecular_functionGO:0008536 Ran GTPase binding IEA
 molecular_functionGO:0008565 protein transporter activity IBA


Pathways (from Reactome)
Pathway description
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000003 adaxial cell adaxial cell decreased amount , abnormal
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 ZFA:0000155 somite somite U-shaped , abnormal
somite decreased amount , abnormal
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 ZFA:0001094 whole organism whole organism decreased amount , abnormal
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 ZFA:0009116 slow muscle cell slow muscle cell morphology , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000055238 kif17 / kinesin family member 17 / Q99PW8* / Q9P2E2* / Kinesin-like protein KIF17 *  / complex / reaction






 

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