ENSDARG00000038397


Danio rerio

Features
Gene ID: ENSDARG00000038397
  
Biological name :rpap2
  
Synonyms : B0UYH6 / RNA polymerase II associated protein 2 / rpap2
  
Possible biological names infered from orthology : Putative RNA polymerase II subunit B1 CTD phosphatase Rpap2 / Q8IXW5 / Q8VC34
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 10790875
Gene end: 10821053
  
Corresponding Affymetrix probe sets: Dr.23900.1.S1_at (Zebrafish Array)   Dr.25701.1.A1_at (Zebrafish Array)   Dr.6989.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000056033
NCBI entrez gene - 554138     See in Manteia.
RefSeq - NM_001277930
RefSeq Peptide - NP_001264859
swissprot - B0UYH6
ZFIN ID - ZDB-GENE-050522-420
Ensembl - ENSDARG00000038397
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPAP2ENSGALG00000005953Gallus gallus
 RPAP2ENSG00000122484Homo sapiens
 Rpap2ENSMUSG00000033773Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007308  Rtr1/RPAP2 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0009301 snRNA transcription ISS
 biological_processGO:0070940 dephosphorylation of RNA polymerase II C-terminal domain IBA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0016591 DNA-directed RNA polymerase II, holoenzyme ISS
 molecular_functionGO:0004721 phosphoprotein phosphatase activity IEA
 molecular_functionGO:0008420 CTD phosphatase activity IBA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000038113 rprd1b / regulation of nuclear pre-mRNA domain containing 1B / Q9CSU0* / Q9NQG5* / Regulation of nuclear pre-mRNA domain-containing protein 1B *  / complex / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr