ENSGALG00000005953


Gallus gallus

Features
Gene ID: ENSGALG00000005953
  
Biological name :RPAP2
  
Synonyms : RNA polymerase II associated protein 2 / RPAP2
  
Possible biological names infered from orthology : Putative RNA polymerase II subunit B1 CTD phosphatase Rpap2 / Q8IXW5 / Q8VC34
  
Species: Gallus gallus
  
Chr. number: 8
Strand: -1
Band:
Gene start: 14215108
Gene end: 14248529
  
Corresponding Affymetrix probe sets: Gga.9632.1.S1_at (Chicken Array)   Gga.9632.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000009558
NCBI entrez gene - 424501     See in Manteia.
RefSeq - XM_015290687
RefSeq - XM_422341
RefSeq - XM_015290688
RefSeq - XM_015290689
swissprot - F1NBW9
Ensembl - ENSGALG00000005953
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rpap2ENSDARG00000038397Danio rerio
 RPAP2ENSG00000122484Homo sapiens
 Rpap2ENSMUSG00000033773Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007308  Rtr1/RPAP2 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009301 snRNA transcription IEA
 biological_processGO:0070940 dephosphorylation of RNA polymerase II C-terminal domain IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016591 DNA-directed RNA polymerase II, holoenzyme IEA
 molecular_functionGO:0008420 CTD phosphatase activity IEA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr