ENSMUSG00000033773


Mus musculus

Features
Gene ID: ENSMUSG00000033773
  
Biological name :Rpap2
  
Synonyms : Putative RNA polymerase II subunit B1 CTD phosphatase Rpap2 / Q8VC34 / Rpap2
  
Possible biological names infered from orthology : Q8IXW5 / RNA polymerase II associated protein 2
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: E5
Gene start: 107597373
Gene end: 107661838
  
Corresponding Affymetrix probe sets: 10523880 (MoGene1.0st)   1424559_at (Mouse Genome 430 2.0 Array)   1435034_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000121306
Ensembl peptide - ENSMUSP00000108274
Ensembl peptide - ENSMUSP00000142510
Ensembl peptide - ENSMUSP00000070209
Ensembl peptide - ENSMUSP00000108269
Ensembl peptide - ENSMUSP00000108270
Ensembl peptide - ENSMUSP00000108273
NCBI entrez gene - 231571     See in Manteia.
MGI - MGI:2141142
RefSeq - XM_011249440
RefSeq - NM_001289569
RefSeq - NM_001289570
RefSeq - NM_144911
RefSeq - XM_006534897
RefSeq - XM_006534900
RefSeq - XM_006534901
RefSeq - XM_006534902
RefSeq - XM_006534903
RefSeq - NM_001163461
RefSeq - NM_001163462
RefSeq Peptide - NP_001276499
RefSeq Peptide - NP_001156933
RefSeq Peptide - NP_001156934
RefSeq Peptide - NP_659160
RefSeq Peptide - NP_001276498
swissprot - Q8VC34
swissprot - D3Z2V7
swissprot - A0A0G2JDU8
Ensembl - ENSMUSG00000033773
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rpap2ENSDARG00000038397Danio rerio
 RPAP2ENSGALG00000005953Gallus gallus
 RPAP2ENSG00000122484Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007308  Rtr1/RPAP2 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0009301 snRNA transcription ISO
 biological_processGO:0070940 dephosphorylation of RNA polymerase II C-terminal domain ISO
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005730 nucleolus ISO
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005829 cytosol ISO
 cellular_componentGO:0016591 DNA-directed RNA polymerase II, holoenzyme ISO
 molecular_functionGO:0004721 phosphoprotein phosphatase activity IEA
 molecular_functionGO:0004722 protein serine/threonine phosphatase activity ISO
 molecular_functionGO:0008420 CTD phosphatase activity ISS
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000027651 Q9CSU0 / Rprd1b / Regulation of nuclear pre-mRNA domain-containing protein 1B / Q9NQG5* / regulation of nuclear pre-mRNA domain containing 1B*  / reaction / complex
 ENSMUSG00000028106 Rprd2 / Q6NXI6 / regulation of nuclear pre-mRNA domain containing 2 / Q5VT52*  / reaction / complex
 ENSMUSG00000040446 Q8VDS4 / Rprd1a / Regulation of nuclear pre-mRNA domain-containing protein 1A / Q96P16* / regulation of nuclear pre-mRNA domain containing 1A*  / complex / reaction






 

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