ENSMUSG00000040446


Mus musculus

Features
Gene ID: ENSMUSG00000040446
  
Biological name :Rprd1a
  
Synonyms : Q8VDS4 / Regulation of nuclear pre-mRNA domain-containing protein 1A / Rprd1a
  
Possible biological names infered from orthology : Q96P16 / regulation of nuclear pre-mRNA domain containing 1A
  
Species: Mus musculus
  
Chr. number: 18
Strand: -1
Band: A2
Gene start: 24484962
Gene end: 24530204
  
Corresponding Affymetrix probe sets: 10457862 (MoGene1.0st)   1438065_at (Mouse Genome 430 2.0 Array)   1451631_at (Mouse Genome 430 2.0 Array)   1454964_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000043618
NCBI entrez gene - 225283     See in Manteia.
MGI - MGI:2385066
RefSeq - XM_011246895
RefSeq - NM_144861
RefSeq - XM_006525824
RefSeq - XM_006525825
RefSeq Peptide - NP_659110
swissprot - Q8VDS4
Ensembl - ENSMUSG00000040446
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rprd1aENSDARG00000104861Danio rerio
 RPRD1AENSGALG00000013129Gallus gallus
 Q96P16ENSG00000141425Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9CSU0 / Rprd1b / Regulation of nuclear pre-mRNA domain-containing protein 1B / Q9NQG5* / regulation of nuclear pre-mRNA domain containing 1B*ENSMUSG0000002765168
Rprd2 / Q6NXI6 / regulation of nuclear pre-mRNA domain containing 2 / Q5VT52*ENSMUSG0000002810626


Protein motifs (from Interpro)
Interpro ID Name
 IPR006569  CID domain
 IPR006903  RNA polymerase II-binding domain
 IPR008942  ENTH/VHS
 IPR032337  Cell-cycle alteration and expression-elevated protein in tumour


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0070940 dephosphorylation of RNA polymerase II C-terminal domain IEA
 cellular_componentGO:0016591 DNA-directed RNA polymerase II, holoenzyme IEA
 molecular_functionGO:0042802 identical protein binding ISO


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000027651 Q9CSU0 / Rprd1b / Regulation of nuclear pre-mRNA domain-containing protein 1B / Q9NQG5* / regulation of nuclear pre-mRNA domain containing 1B*  / complex
 ENSMUSG00000033773 Rpap2 / Q8VC34 / Putative RNA polymerase II subunit B1 CTD phosphatase Rpap2 / Q8IXW5* / RNA polymerase II associated protein 2*  / complex / reaction
 ENSMUSG00000040446 Q8VDS4 / Rprd1a / Regulation of nuclear pre-mRNA domain-containing protein 1A / Q96P16* / regulation of nuclear pre-mRNA domain containing 1A*  / complex
 ENSMUSG00000028106 Rprd2 / Q6NXI6 / regulation of nuclear pre-mRNA domain containing 2 / Q5VT52*  / complex / reaction






 

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