ENSMUSG00000028106


Mus musculus

Features
Gene ID: ENSMUSG00000028106
  
Biological name :Rprd2
  
Synonyms : Q6NXI6 / regulation of nuclear pre-mRNA domain containing 2 / Rprd2
  
Possible biological names infered from orthology : Q5VT52
  
Species: Mus musculus
  
Chr. number: 3
Strand: -1
Band: F2.1
Gene start: 95760341
Gene end: 95818863
  
Corresponding Affymetrix probe sets: 10500237 (MoGene1.0st)   1431425_a_at (Mouse Genome 430 2.0 Array)   1431426_at (Mouse Genome 430 2.0 Array)   1434817_s_at (Mouse Genome 430 2.0 Array)   1437641_at (Mouse Genome 430 2.0 Array)   1438028_at (Mouse Genome 430 2.0 Array)   1438029_at (Mouse Genome 430 2.0 Array)   1453371_at (Mouse Genome 430 2.0 Array)   1455253_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000143240
Ensembl peptide - ENSMUSP00000143333
Ensembl peptide - ENSMUSP00000088297
NCBI entrez gene - 75137     See in Manteia.
MGI - MGI:1922387
RefSeq - XM_006502227
RefSeq - XM_006502228
RefSeq - XM_011240267
RefSeq - NM_001081293
RefSeq Peptide - NP_001074762
swissprot - Q6NXI6
swissprot - A0A0G2JFN1
swissprot - A0A0G2JFW6
Ensembl - ENSMUSG00000028106
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rprd2aENSDARG00000058089Danio rerio
 rprd2bENSDARG00000074676Danio rerio
 RPRD2ENSGALG00000014656Gallus gallus
 RPRD2ENSG00000163125Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8VDS4 / Rprd1a / Regulation of nuclear pre-mRNA domain-containing protein 1A / Q96P16* / regulation of nuclear pre-mRNA domain containing 1A*ENSMUSG000000404466
Q9CSU0 / Rprd1b / Regulation of nuclear pre-mRNA domain-containing protein 1B / Q9NQG5* / regulation of nuclear pre-mRNA domain containing 1B*ENSMUSG000000276516


Protein motifs (from Interpro)
Interpro ID Name
 IPR006569  CID domain
 IPR006903  RNA polymerase II-binding domain
 IPR008942  ENTH/VHS
 IPR032337  Cell-cycle alteration and expression-elevated protein in tumour


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0016591 DNA-directed RNA polymerase II, holoenzyme IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000033773 Rpap2 / Q8VC34 / Putative RNA polymerase II subunit B1 CTD phosphatase Rpap2 / Q8IXW5* / RNA polymerase II associated protein 2*  / reaction / complex
 ENSMUSG00000040446 Q8VDS4 / Rprd1a / Regulation of nuclear pre-mRNA domain-containing protein 1A / Q96P16* / regulation of nuclear pre-mRNA domain containing 1A*  / complex / reaction
 ENSMUSG00000027651 Q9CSU0 / Rprd1b / Regulation of nuclear pre-mRNA domain-containing protein 1B / Q9NQG5* / regulation of nuclear pre-mRNA domain containing 1B*  / reaction / complex






 

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