ENSG00000163125


Homo sapiens

Features
Gene ID: ENSG00000163125
  
Biological name :RPRD2
  
Synonyms : Q5VT52 / regulation of nuclear pre-mRNA domain containing 2 / RPRD2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: q21.2
Gene start: 150363091
Gene end: 150476566
  
Corresponding Affymetrix probe sets: 212553_at (Human Genome U133 Plus 2.0 Array)   226527_at (Human Genome U133 Plus 2.0 Array)   235415_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000358063
Ensembl peptide - ENSP00000358064
Ensembl peptide - ENSP00000383785
NCBI entrez gene - 23248     See in Manteia.
OMIM - 614695
RefSeq - XM_017000767
RefSeq - NM_001297673
RefSeq - NM_001297674
RefSeq - NM_015203
RefSeq - XM_017000763
RefSeq - XM_017000764
RefSeq - XM_017000765
RefSeq - XM_017000766
RefSeq - XM_005245033
RefSeq - XM_006711240
RefSeq - XM_011509344
RefSeq Peptide - NP_001284603
RefSeq Peptide - NP_056018
RefSeq Peptide - NP_001284602
swissprot - Q5VT52
Ensembl - ENSG00000163125
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rprd2aENSDARG00000058089Danio rerio
 rprd2bENSDARG00000074676Danio rerio
 RPRD2ENSGALG00000014656Gallus gallus
 Rprd2ENSMUSG00000028106Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9NQG5 / RPRD1B / regulation of nuclear pre-mRNA domain containing 1BENSG000001014136
Q96P16 / RPRD1A / regulation of nuclear pre-mRNA domain containing 1AENSG000001414256


Protein motifs (from Interpro)
Interpro ID Name
 IPR006569  CID domain
 IPR006903  RNA polymerase II-binding domain
 IPR008942  ENTH/VHS
 IPR032337  Cell-cycle alteration and expression-elevated protein in tumour


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0042795 snRNA transcription by RNA polymerase II TAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0016591 DNA-directed RNA polymerase II, holoenzyme IDA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000101413 Q9NQG5 / RPRD1B / regulation of nuclear pre-mRNA domain containing 1B  / reaction / complex
 ENSG00000141425 Q96P16 / RPRD1A / regulation of nuclear pre-mRNA domain containing 1A  / reaction / complex
 ENSG00000122484 RPAP2 / Q8IXW5 / RNA polymerase II associated protein 2  / complex / reaction






 

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