ENSG00000101413


Homo sapiens

Features
Gene ID: ENSG00000101413
  
Biological name :RPRD1B
  
Synonyms : Q9NQG5 / regulation of nuclear pre-mRNA domain containing 1B / RPRD1B
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: 1
Band: q11.23
Gene start: 38033546
Gene end: 38127780
  
Corresponding Affymetrix probe sets: 225024_at (Human Genome U133 Plus 2.0 Array)   230801_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000362532
Ensembl peptide - ENSP00000484897
Ensembl peptide - ENSP00000478724
Ensembl peptide - ENSP00000436816
Ensembl peptide - ENSP00000433947
Ensembl peptide - ENSP00000416420
NCBI entrez gene - 58490     See in Manteia.
OMIM - 614694
RefSeq - XM_017027991
RefSeq - XM_017027990
RefSeq - XM_005260477
RefSeq - XM_005260480
RefSeq - NM_021215
RefSeq - XM_011528954
RefSeq Peptide - NP_067038
swissprot - Q9NQG5
swissprot - E9PQF3
swissprot - A0A087WUK3
swissprot - A0A087X2D2
swissprot - A2A2M0
swissprot - E9PIQ9
Ensembl - ENSG00000101413
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rprd1bENSDARG00000038113Danio rerio
 RPRD1BENSGALG00000006788Gallus gallus
 Q9CSU0ENSMUSG00000027651Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q96P16 / RPRD1A / regulation of nuclear pre-mRNA domain containing 1AENSG0000014142565
RPRD2 / Q5VT52 / regulation of nuclear pre-mRNA domain containing 2ENSG0000016312526


Protein motifs (from Interpro)
Interpro ID Name
 IPR006569  CID domain
 IPR006903  RNA polymerase II-binding domain
 IPR008942  ENTH/VHS
 IPR032337  Cell-cycle alteration and expression-elevated protein in tumour


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0008284 positive regulation of cell proliferation IDA
 biological_processGO:0010564 regulation of cell cycle process IDA
 biological_processGO:0042795 snRNA transcription by RNA polymerase II TAS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0070940 dephosphorylation of RNA polymerase II C-terminal domain IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0016591 DNA-directed RNA polymerase II, holoenzyme IDA
 molecular_functionGO:0000993 RNA polymerase II core binding IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042802 identical protein binding IPI


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000141425 Q96P16 / RPRD1A / regulation of nuclear pre-mRNA domain containing 1A  / complex
 ENSG00000101413 Q9NQG5 / RPRD1B / regulation of nuclear pre-mRNA domain containing 1B  / complex
 ENSG00000163125 RPRD2 / Q5VT52 / regulation of nuclear pre-mRNA domain containing 2  / reaction / complex
 ENSG00000122484 RPAP2 / Q8IXW5 / RNA polymerase II associated protein 2  / reaction / complex






 

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