ENSGALG00000006788


Gallus gallus

Features
Gene ID: ENSGALG00000006788
  
Biological name :RPRD1B
  
Synonyms : regulation of nuclear pre-mRNA domain containing 1B / RPRD1B
  
Possible biological names infered from orthology : Q9CSU0 / Q9NQG5 / Regulation of nuclear pre-mRNA domain-containing protein 1B
  
Species: Gallus gallus
  
Chr. number: 20
Strand: -1
Band:
Gene start: 10582451
Gene end: 10603260
  
Corresponding Affymetrix probe sets: Gga.16262.1.S1_at (Chicken Array)   GgaAffx.4222.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000010965
Ensembl peptide - ENSGALP00000061230
Ensembl peptide - ENSGALP00000049116
NCBI entrez gene - 419295     See in Manteia.
RefSeq - NM_001030862
RefSeq Peptide - NP_001026033
swissprot - A0A1L1RR12
swissprot - A0A1D5P8R7
swissprot - Q5F4B4
Ensembl - ENSGALG00000006788
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rprd1bENSDARG00000038113Danio rerio
 Q9NQG5ENSG00000101413Homo sapiens
 Q9CSU0ENSMUSG00000027651Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RPRD1A / regulation of nuclear pre-mRNA domain-containing protein 1A / Q8VDS4* / Q96P16* / regulation of nuclear pre-mRNA domain containing 1A*ENSGALG0000001312963
RPRD2 / regulation of nuclear pre-mRNA domain containing 2 / Q5VT52* / Q6NXI6*ENSGALG0000001465627


Protein motifs (from Interpro)
Interpro ID Name
 IPR006569  CID domain
 IPR006903  RNA polymerase II-binding domain
 IPR008942  ENTH/VHS
 IPR032337  Cell-cycle alteration and expression-elevated protein in tumour


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0010564 regulation of cell cycle process IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0070940 dephosphorylation of RNA polymerase II C-terminal domain IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016591 DNA-directed RNA polymerase II, holoenzyme IEA
 molecular_functionGO:0000993 RNA polymerase II core binding IEA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000006788 RPRD1B / regulation of nuclear pre-mRNA domain containing 1B / Q9CSU0* / Q9NQG5* / Regulation of nuclear pre-mRNA domain-containing protein 1B *  / complex
 ENSGALG00000013129 RPRD1A / regulation of nuclear pre-mRNA domain-containing protein 1A / Q8VDS4* / Q96P16* / regulation of nuclear pre-mRNA domain containing 1A*  / complex
 ENSGALG00000014656 RPRD2 / regulation of nuclear pre-mRNA domain containing 2 / Q5VT52* / Q6NXI6*  / reaction / complex






 

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