ENSGALG00000013129


Gallus gallus

Features
Gene ID: ENSGALG00000013129
  
Biological name :RPRD1A
  
Synonyms : regulation of nuclear pre-mRNA domain-containing protein 1A / RPRD1A
  
Possible biological names infered from orthology : Q8VDS4 / Q96P16 / regulation of nuclear pre-mRNA domain containing 1A
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 83790809
Gene end: 83833193
  
Corresponding Affymetrix probe sets: Gga.12933.1.S1_at (Chicken Array)   GgaAffx.21597.1.S1_at (Chicken Array)   GgaAffx.21597.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000021401
Ensembl peptide - ENSGALP00000030363
NCBI entrez gene - 420953     See in Manteia.
RefSeq - XM_015282325
RefSeq - NM_001031005
RefSeq Peptide - NP_001026176
swissprot - F1NHL7
swissprot - F1NQ92
Ensembl - ENSGALG00000013129
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rprd1aENSDARG00000104861Danio rerio
 Q96P16ENSG00000141425Homo sapiens
 Q8VDS4ENSMUSG00000040446Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RPRD1B / regulation of nuclear pre-mRNA domain containing 1B / Q9CSU0* / Q9NQG5* / Regulation of nuclear pre-mRNA domain-containing protein 1B *ENSGALG0000000678866
RPRD2 / regulation of nuclear pre-mRNA domain containing 2 / Q5VT52* / Q6NXI6*ENSGALG0000001465626


Protein motifs (from Interpro)
Interpro ID Name
 IPR006569  CID domain
 IPR006903  RNA polymerase II-binding domain
 IPR008942  ENTH/VHS
 IPR032337  Cell-cycle alteration and expression-elevated protein in tumour


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0070940 dephosphorylation of RNA polymerase II C-terminal domain IEA
 cellular_componentGO:0016591 DNA-directed RNA polymerase II, holoenzyme IEA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000006788 RPRD1B / regulation of nuclear pre-mRNA domain containing 1B / Q9CSU0* / Q9NQG5* / Regulation of nuclear pre-mRNA domain-containing protein 1B *  / complex
 ENSGALG00000013129 RPRD1A / regulation of nuclear pre-mRNA domain-containing protein 1A / Q8VDS4* / Q96P16* / regulation of nuclear pre-mRNA domain containing 1A*  / complex
 ENSGALG00000014656 RPRD2 / regulation of nuclear pre-mRNA domain containing 2 / Q5VT52* / Q6NXI6*  / complex / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr