ENSG00000141425


Homo sapiens

Features
Gene ID: ENSG00000141425
  
Biological name :RPRD1A
  
Synonyms : Q96P16 / regulation of nuclear pre-mRNA domain containing 1A / RPRD1A
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 18
Strand: -1
Band: q12.2
Gene start: 35984387
Gene end: 36067576
  
Corresponding Affymetrix probe sets: 1555202_a_at (Human Genome U133 Plus 2.0 Array)   218209_s_at (Human Genome U133 Plus 2.0 Array)   222558_at (Human Genome U133 Plus 2.0 Array)   222559_s_at (Human Genome U133 Plus 2.0 Array)   225953_at (Human Genome U133 Plus 2.0 Array)   228566_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000468108
Ensembl peptide - ENSP00000467991
Ensembl peptide - ENSP00000468173
Ensembl peptide - ENSP00000468209
Ensembl peptide - ENSP00000349955
Ensembl peptide - ENSP00000381984
Ensembl peptide - ENSP00000465444
Ensembl peptide - ENSP00000467268
Ensembl peptide - ENSP00000467949
NCBI entrez gene - 55197     See in Manteia.
OMIM - 610347
RefSeq - XM_017025808
RefSeq - NM_001303411
RefSeq - NM_001303412
RefSeq - NM_001303413
RefSeq - NM_018170
RefSeq - XM_011526048
RefSeq - XM_011526049
RefSeq - XM_011526050
RefSeq Peptide - NP_001290341
RefSeq Peptide - NP_001290342
RefSeq Peptide - NP_060640
RefSeq Peptide - NP_001290340
swissprot - K7ER50
swissprot - A0A024RC37
swissprot - Q96P16
swissprot - A0A0C4DGQ6
swissprot - K7EP82
swissprot - K7EQR8
Ensembl - ENSG00000141425
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rprd1aENSDARG00000104861Danio rerio
 RPRD1AENSGALG00000013129Gallus gallus
 Q8VDS4ENSMUSG00000040446Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9NQG5 / RPRD1B / regulation of nuclear pre-mRNA domain containing 1BENSG0000010141368
RPRD2 / Q5VT52 / regulation of nuclear pre-mRNA domain containing 2ENSG0000016312526


Protein motifs (from Interpro)
Interpro ID Name
 IPR006569  CID domain
 IPR006903  RNA polymerase II-binding domain
 IPR008942  ENTH/VHS
 IPR032337  Cell-cycle alteration and expression-elevated protein in tumour


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0042795 snRNA transcription by RNA polymerase II TAS
 biological_processGO:0070940 dephosphorylation of RNA polymerase II C-terminal domain IMP
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0016591 DNA-directed RNA polymerase II, holoenzyme IDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000101413 Q9NQG5 / RPRD1B / regulation of nuclear pre-mRNA domain containing 1B  / complex
 ENSG00000141425 Q96P16 / RPRD1A / regulation of nuclear pre-mRNA domain containing 1A  / complex
 ENSG00000163125 RPRD2 / Q5VT52 / regulation of nuclear pre-mRNA domain containing 2  / reaction / complex
 ENSG00000122484 RPAP2 / Q8IXW5 / RNA polymerase II associated protein 2  / reaction / complex






 

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