ENSDARG00000039270


Danio rerio

Features
Gene ID: ENSDARG00000039270
  
Biological name :vti1b
  
Synonyms : vesicle transport through interaction with t-SNAREs 1B / vti1b
  
Possible biological names infered from orthology : Q9UEU0
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 33040436
Gene end: 33054856
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000119237
Ensembl peptide - ENSDARP00000057378
NCBI entrez gene - 394011     See in Manteia.
RefSeq - NM_201036
RefSeq Peptide - NP_957330
swissprot - B8A541
swissprot - Q7SY45
ZFIN ID - ZDB-GENE-040426-1148
Ensembl - ENSDARG00000039270
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VTI1BENSGALG00000009526Gallus gallus
 VTI1BENSG00000100568Homo sapiens
 Vti1bENSMUSG00000021124Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
vti1a / vesicle transport through interaction with t-SNAREs 1A / O89116* / Q96AJ9*ENSDARG0000004506528


Protein motifs (from Interpro)
Interpro ID Name
 IPR000727  Target SNARE coiled-coil homology domain
 IPR007705  Vesicle transport v-SNARE, N-terminal
 IPR010989  SNARE


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006623 protein targeting to vacuole IBA
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IBA
 biological_processGO:0006891 intra-Golgi vesicle-mediated transport IBA
 biological_processGO:0006896 Golgi to vacuole transport IBA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IBA
 biological_processGO:0048280 vesicle fusion with Golgi apparatus IBA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IBA
 cellular_componentGO:0005794 Golgi apparatus IBA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0012507 ER to Golgi transport vesicle membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031201 SNARE complex IBA
 cellular_componentGO:0031902 late endosome membrane IBA
 molecular_functionGO:0000149 SNARE binding IBA
 molecular_functionGO:0005484 SNAP receptor activity IBA


Pathways (from Reactome)
Pathway description
Platelet degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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