ENSDARG00000040510


Danio rerio

Features
Gene ID: ENSDARG00000040510
  
Biological name :ca15b
  
Synonyms : ca15b / carbonic anhydrase XVb
  
Possible biological names infered from orthology : CA4 / Car4 / carbonic anhydrase 4 / P22748 / Q64444
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 4294923
Gene end: 4301376
  
Corresponding Affymetrix probe sets: Dr.25133.11.S1_at (Zebrafish Array)   NM_213182_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000126638
Ensembl peptide - ENSDARP00000126698
Ensembl peptide - ENSDARP00000126700
Ensembl peptide - ENSDARP00000126736
NCBI entrez gene - 791844     See in Manteia.
RefSeq - NM_213182
RefSeq Peptide - NP_998347
swissprot - R4GDT2
swissprot - R4GDY8
swissprot - R4GDZ0
swissprot - R4GE23
ZFIN ID - ZDB-GENE-040426-2222
Ensembl - ENSDARG00000040510
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CA4ENSGALG00000005360Gallus gallus
 CA4ENSG00000167434Homo sapiens
 Car4ENSMUSG00000000805Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ca15c / carbonic anhydrase XV c / CA4* / Car4* / P22748* / Q64444* / carbonic anhydrase 4*ENSDARG0000000225950
ca15a / carbonic anhydrase XVa / CA4* / Car4* / P22748* / Q64444* / carbonic anhydrase 4*ENSDARG0000001565449
zgc:153760 / CA4* / Car4* / P22748* / Q64444* / carbonic anhydrase 4*ENSDARG0000007466647
ca4c / carbonic anhydrase IV cENSDARG0000004451232
ca4a / carbonic anhydrase IV aENSDARG0000004358930
ca4b / carbonic anhydrase IV bENSDARG0000004229329
ca14 / carbonic anhydrase XIV / Car14* / Q9ULX7* / Q9WVT6* / carbonic anhydrase 14* / Mus musculus carbonic anhydrase 14 (Car14), transcript variant 2, mRNA.*ENSDARG0000006169728
CA4 (1 of many) / si:ch211-173d10.4 / CA4* / Car4* / P22748* / Q64444* / carbonic anhydrase 4*ENSDARG0000008775628
ca6 / carbonic anhydrase VI / Car6* / P18761* / P23280* / carbonic anhydrase 6*ENSDARG0000005649928
ca7 / carbonic anhydrase VII / Car7* / P43166* / Q9ERQ8* / carbonic anhydrase 7*ENSDARG0000004513926
ca2 / carbonic anhydrase II / CA3* / CA1* / CA13* / Q8N1Q1* / P00915* / P00918* / P07451* / carbonic anhydrase 1* / carbonic anhydrase 3* / carbonic anhydrase 2* / carbonic anhydrase 13*ENSDARG0000001448826
ca9 / carbonic anhydrase IX / Car9* / Q16790* / Q8VHB5* / carbonic anhydrase 9*ENSDARG0000010230026
cahz / Q92051 / carbonic anhydrase / CA2* / CA3* / CA1* / CA13* / Car1* / Car2* / Car3* / Car13* / Q9D6N1* / P00920* / P07451* / P13634* / P16015* / Q8N1Q1* / P00915* / P00918* / carbonic a...ENSDARG0000001116625
ca5a / carbonic anhydrase Va / CA5B* / Car5a* / Car5b* / Q9Y2D0* / P23589* / P35218* / Q9QZA0* / carbonic anhydrase 5A* / carbonic anhydrase 5B* / Carbonic anhydrase 5B, mitochondrial * / C...ENSDARG0000010177824
ca8 / carbonic anhydrase VIII / Car8* / P28651* / P35219* / carbonic anhydrase 8* / Carbonic anhydrase-related protein *ENSDARG0000003909822
ca12 / carbonic anhydrase XII / Car12* / O43570* / carbonic anhydrase 12*ENSDARG0000004564421


Protein motifs (from Interpro)
Interpro ID Name
 IPR001148  Alpha carbonic anhydrase domain
 IPR018338  Carbonic anhydrase, alpha-class, conserved site
 IPR023561  Carbonic anhydrase, alpha-class


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006730 one-carbon metabolic process IEA
 biological_processGO:0008354 germ cell migration IMP
 biological_processGO:0051453 regulation of intracellular pH IMP
 cellular_componentGO:0005623 cell IEA
 molecular_functionGO:0004089 carbonate dehydratase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Erythrocytes take up carbon dioxide and release oxygen
Erythrocytes take up oxygen and release carbon dioxide
Reversible hydration of carbon dioxide


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0009288 primordial germ cell primordial germ cell mislocalised , exacerbated
primordial germ cell mislocalised , abnormal
primordial germ cell bleb assembly increased occurrence , abnormal
primordial germ cell actin filament polymerization decreased occurrence , abnormal
primordial germ cell establishment of cell polarity decreased occurrence , abnormal
primordial germ cell regulation of intracellular pH process quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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