ENSDARG00000040566


Danio rerio

Features
Gene ID: ENSDARG00000040566
  
Biological name :phykpl
  
Synonyms : 5-phosphohydroxy-L-lysine phospho-lyase / phykpl
  
Possible biological names infered from orthology : 5-phosphohydroxy-L-lysine phospholyase / Q8IUZ5 / Q8R1K4
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 23443665
Gene end: 23451449
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000059368
NCBI entrez gene - 557205     See in Manteia.
RefSeq - NM_001037557
RefSeq Peptide - NP_001032646
swissprot - Q2YDQ8
ZFIN ID - ZDB-GENE-051127-33
Ensembl - ENSDARG00000040566
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PHYKPLENSGALG00000023920Gallus gallus
 PHYKPLENSG00000175309Homo sapiens
 PhykplENSMUSG00000020359Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
etnppl / Q7SY54 / ethanolamine-phosphate phospho-lyase / Q8TBG4*ENSDARG0000003554463
agxt2 / alanine--glyoxylate aminotransferase 2 / Q9BYV1*ENSDARG0000010070936


Protein motifs (from Interpro)
Interpro ID Name
 IPR005814  Aminotransferase class-III
 IPR015421  Pyridoxal phosphate-dependent transferase, major domain
 IPR015422  Pyridoxal phosphate-dependent transferase domain 1
 IPR015424  Pyridoxal phosphate-dependent transferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005739 mitochondrion IBA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0008453 alanine-glyoxylate transaminase activity IBA
 molecular_functionGO:0008483 transaminase activity IEA
 molecular_functionGO:0030170 pyridoxal phosphate binding IBA
 molecular_functionGO:0042802 identical protein binding IBA


Pathways (from Reactome)
Pathway description
Collagen degradation
Lysine catabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000040566 phykpl / 5-phosphohydroxy-L-lysine phospho-lyase / Q8IUZ5* / Q8R1K4* / 5-phosphohydroxy-L-lysine phospholyase*  / complex






 

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contact: otassy@igbmc.fr