ENSDARG00000040657


Danio rerio

Features
Gene ID: ENSDARG00000040657
  
Biological name :wipi1
  
Synonyms : WD repeat domain, phosphoinositide interacting 1 / wipi1
  
Possible biological names infered from orthology : Q5MNZ9 / Q8R3E3
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 36284986
Gene end: 36306403
  
Corresponding Affymetrix probe sets: Dr.26126.1.S1_at (Zebrafish Array)   NM_200391_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000059532
NCBI entrez gene - 393362     See in Manteia.
RefSeq - NM_200391
RefSeq - XM_005164002
RefSeq Peptide - NP_956685
swissprot - B0S7L1
ZFIN ID - ZDB-GENE-040426-1404
Ensembl - ENSDARG00000040657
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 WIPI1ENSGALG00000004215Gallus gallus
 WIPI1ENSG00000070540Homo sapiens
 Wipi1ENSMUSG00000041895Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
wipi2 / WD repeat domain, phosphoinositide interacting 2 / Q80W47* / Q9Y4P8*ENSDARG0000003787155


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR032909  WD repeat domain phosphoinositide-interacting protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000422 autophagy of mitochondrion IBA
 biological_processGO:0006497 protein lipidation IBA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0034497 protein localization to phagophore assembly site IBA
 biological_processGO:0044804 autophagy of nucleus IBA
 cellular_componentGO:0005829 cytosol IBA
 cellular_componentGO:0019898 extrinsic component of membrane IBA
 cellular_componentGO:0034045 phagophore assembly site membrane IBA
 molecular_functionGO:0032266 phosphatidylinositol-3-phosphate binding IBA
 molecular_functionGO:0080025 phosphatidylinositol-3,5-bisphosphate binding IBA


Pathways (from Reactome)
Pathway description
Macroautophagy


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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