ENSDARG00000041226


Danio rerio

Features
Gene ID: ENSDARG00000041226
  
Biological name :cdc40
  
Synonyms : cdc40 / cell division cycle 40 homolog (S. cerevisiae)
  
Possible biological names infered from orthology : cell division cycle 40 / O60508 / Pre-mRNA-processing factor 17 / Q9DC48
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 53368611
Gene end: 53401999
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000060431
NCBI entrez gene - 494534     See in Manteia.
RefSeq - NM_001009990
RefSeq Peptide - NP_001009990
swissprot - A5WUR0
ZFIN ID - ZDB-GENE-050116-3
Ensembl - ENSDARG00000041226
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CDC40ENSGALG00000015061Gallus gallus
 CDC40ENSG00000168438Homo sapiens
 Cdc40ENSMUSG00000038446Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR032847  Pre-mRNA-processing factor 17


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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