ENSGALG00000015061


Gallus gallus

Features
Gene ID: ENSGALG00000015061
  
Biological name :CDC40
  
Synonyms : CDC40 / pre-mRNA-processing factor 17
  
Possible biological names infered from orthology : cell division cycle 40 / O60508 / Q9DC48
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 66787972
Gene end: 66824444
  
Corresponding Affymetrix probe sets: GgaAffx.9568.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000024253
NCBI entrez gene - 421760     See in Manteia.
RefSeq - NM_001006407
RefSeq Peptide - NP_001006407
swissprot - F1NQ45
Ensembl - ENSGALG00000015061
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cdc40ENSDARG00000041226Danio rerio
 CDC40ENSG00000168438Homo sapiens
 Cdc40ENSMUSG00000038446Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
WDR25* / E9Q349* / Q64LD2* / WD repeat domain 25*ENSGALG0000002889715
WDR25* / E9Q349* / Q64LD2* / WD repeat domain 25*ENSGALG000000453998


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR032847  Pre-mRNA-processing factor 17


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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