ENSMUSG00000038446


Mus musculus

Features
Gene ID: ENSMUSG00000038446
  
Biological name :Cdc40
  
Synonyms : Cdc40 / Pre-mRNA-processing factor 17 / Q9DC48
  
Possible biological names infered from orthology : cell division cycle 40 / O60508
  
Species: Mus musculus
  
Chr. number: 10
Strand: -1
Band: B1
Gene start: 40831621
Gene end: 40883311
  
Corresponding Affymetrix probe sets: 10368762 (MoGene1.0st)   1442667_at (Mouse Genome 430 2.0 Array)   1445348_at (Mouse Genome 430 2.0 Array)   1453342_at (Mouse Genome 430 2.0 Array)   1457366_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000044305
NCBI entrez gene - 71713     See in Manteia.
MGI - MGI:1918963
RefSeq - NM_027879
RefSeq Peptide - NP_082155
swissprot - Q9DC48
Ensembl - ENSMUSG00000038446
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cdc40ENSDARG00000041226Danio rerio
 CDC40ENSGALG00000015061Gallus gallus
 CDC40ENSG00000168438Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Wdr25 / E9Q349 / WD repeat domain 25 / Q64LD2*ENSMUSG0000004087721


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR032847  Pre-mRNA-processing factor 17
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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