ENSG00000168438


Homo sapiens

Features
Gene ID: ENSG00000168438
  
Biological name :CDC40
  
Synonyms : CDC40 / cell division cycle 40 / O60508
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: q21
Gene start: 110180141
Gene end: 110254275
  
Corresponding Affymetrix probe sets: 203376_at (Human Genome U133 Plus 2.0 Array)   203377_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000357926
Ensembl peptide - ENSP00000357928
Ensembl peptide - ENSP00000304370
NCBI entrez gene - 51362     See in Manteia.
OMIM - 605585
RefSeq - NM_015891
RefSeq Peptide - NP_056975
swissprot - O60508
swissprot - Q5SRN1
Ensembl - ENSG00000168438
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cdc40ENSDARG00000041226Danio rerio
 CDC40ENSGALG00000015061Gallus gallus
 Cdc40ENSMUSG00000038446Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
WDR25 / Q64LD2 / WD repeat domain 25ENSG0000017647319


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR032847  Pre-mRNA-processing factor 17
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006369 termination of RNA polymerase II transcription TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006405 RNA export from nucleus TAS
 biological_processGO:0006406 mRNA export from nucleus TAS
 biological_processGO:0008380 RNA splicing TAS
 biological_processGO:0031124 mRNA 3"-end processing TAS
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex TAS
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IDA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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