ENSDARG00000041323


Danio rerio

Features
Gene ID: ENSDARG00000041323
  
Biological name :csdc2a
  
Synonyms : cold shock domain containing C2, RNA binding a / csdc2a
  
Possible biological names infered from orthology : cold shock domain containing C2 / Cold shock domain-containing protein C2 / CSDC2 / Q91YQ3 / Q9Y534
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 19099264
Gene end: 19103490
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000060560
Ensembl peptide - ENSDARP00000147891
NCBI entrez gene - 436963     See in Manteia.
RefSeq - NM_001002690
RefSeq Peptide - NP_001002690
swissprot - F1R500
ZFIN ID - ZDB-GENE-040718-442
Ensembl - ENSDARG00000041323
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CSDC2ENSGALG00000030101Gallus gallus
 CSDC2ENSG00000172346Homo sapiens
 Csdc2ENSMUSG00000042109Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CSDC2 (1 of many) / cold shock domain containing C2 / CSDC2* / Q9Y534*ENSDARG0000010016762
carhsp1 / calcium regulated heat stable protein 1 / Q9CR86* / Q9Y2V2*ENSDARG0000005312955


Protein motifs (from Interpro)
Interpro ID Name
 IPR002059  Cold-shock protein, DNA-binding
 IPR011129  Cold shock domain
 IPR012340  Nucleic acid-binding, OB-fold
 IPR019844  Cold-shock conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0043488 regulation of mRNA stability IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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