ENSG00000172346


Homo sapiens

Features
Gene ID: ENSG00000172346
  
Biological name :CSDC2
  
Synonyms : cold shock domain containing C2 / CSDC2 / Q9Y534
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: 1
Band: q13.2
Gene start: 41560763
Gene end: 41577741
  
Corresponding Affymetrix probe sets: 209981_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000302485
Ensembl peptide - ENSP00000417127
NCBI entrez gene - 27254     See in Manteia.
OMIM - 617689
RefSeq - NM_014460
RefSeq Peptide - NP_055275
swissprot - Q9Y534
swissprot - H7C4E7
Ensembl - ENSG00000172346
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CSDC2 (1 of many)ENSDARG00000100167Danio rerio
 csdc2aENSDARG00000041323Danio rerio
 CSDC2ENSGALG00000030101Gallus gallus
 Csdc2ENSMUSG00000042109Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9Y2V2 / CARHSP1 / calcium regulated heat stable protein 1ENSG0000015304860


Protein motifs (from Interpro)
Interpro ID Name
 IPR002059  Cold-shock protein, DNA-binding
 IPR011129  Cold shock domain
 IPR012340  Nucleic acid-binding, OB-fold
 IPR019844  Cold-shock conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0043488 regulation of mRNA stability IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding NAS
 molecular_functionGO:0003730 mRNA 3"-UTR binding IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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