ENSMUSG00000042109


Mus musculus

Features
Gene ID: ENSMUSG00000042109
  
Biological name :Csdc2
  
Synonyms : Cold shock domain-containing protein C2 / Csdc2 / Q91YQ3
  
Possible biological names infered from orthology : cold shock domain containing C2 / Q9Y534
  
Species: Mus musculus
  
Chr. number: 15
Strand: 1
Band: E1
Gene start: 81936759
Gene end: 81950941
  
Corresponding Affymetrix probe sets: 10425623 (MoGene1.0st)   1423845_at (Mouse Genome 430 2.0 Array)   1437841_x_at (Mouse Genome 430 2.0 Array)   1451147_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000154905
Ensembl peptide - ENSMUSP00000155106
Ensembl peptide - ENSMUSP00000044441
Ensembl peptide - ENSMUSP00000121080
NCBI entrez gene - 105859     See in Manteia.
MGI - MGI:2146027
RefSeq - NM_145473
RefSeq Peptide - NP_663448
swissprot - D3YTN0
swissprot - Q91YQ3
Ensembl - ENSMUSG00000042109
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CSDC2 (1 of many)ENSDARG00000100167Danio rerio
 csdc2aENSDARG00000041323Danio rerio
 CSDC2ENSGALG00000030101Gallus gallus
 CSDC2ENSG00000172346Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9CR86 / Carhsp1 / Calcium-regulated heat stable protein 1 / Q9Y2V2*ENSMUSG0000000839358


Protein motifs (from Interpro)
Interpro ID Name
 IPR002059  Cold-shock protein, DNA-binding
 IPR011129  Cold shock domain
 IPR012340  Nucleic acid-binding, OB-fold
 IPR019844  Cold-shock conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0043488 regulation of mRNA stability IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IBA
 molecular_functionGO:0008134 transcription factor binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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