ENSMUSG00000008393


Mus musculus

Features
Gene ID: ENSMUSG00000008393
  
Biological name :Carhsp1
  
Synonyms : Calcium-regulated heat stable protein 1 / Carhsp1 / Q9CR86
  
Possible biological names infered from orthology : Q9Y2V2
  
Species: Mus musculus
  
Chr. number: 16
Strand: -1
Band: A1
Gene start: 8658580
Gene end: 8672155
  
Corresponding Affymetrix probe sets: 10437590 (MoGene1.0st)   10497752 (MoGene1.0st)   1415975_at (Mouse Genome 430 2.0 Array)   1415976_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000008537
NCBI entrez gene - 52502     See in Manteia.
MGI - MGI:1196368
RefSeq - XM_006522348
RefSeq - NM_025821
RefSeq - XM_006522346
RefSeq - XM_006522347
RefSeq Peptide - NP_080097
swissprot - Q5M9P7
swissprot - Q9CR86
Ensembl - ENSMUSG00000008393
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 carhsp1ENSDARG00000053129Danio rerio
 CARHSP1ENSGALG00000042981Gallus gallus
 Q9Y2V2ENSG00000153048Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Csdc2 / Q91YQ3 / Cold shock domain-containing protein C2 / Q9Y534* / cold shock domain containing C2*ENSMUSG0000004210961


Protein motifs (from Interpro)
Interpro ID Name
 IPR002059  Cold-shock protein, DNA-binding
 IPR011129  Cold shock domain
 IPR012340  Nucleic acid-binding, OB-fold
 IPR019844  Cold-shock conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0043488 regulation of mRNA stability IMP
 cellular_componentGO:0000177 cytoplasmic exosome (RNase complex) IDA
 cellular_componentGO:0000932 P-body IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0043186 P granule IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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