ENSDARG00000053129


Danio rerio

Features
Gene ID: ENSDARG00000053129
  
Biological name :carhsp1
  
Synonyms : calcium regulated heat stable protein 1 / carhsp1
  
Possible biological names infered from orthology : Q9CR86 / Q9Y2V2
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 27798094
Gene end: 27831815
  
Corresponding Affymetrix probe sets: Dr.3737.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000069585
Ensembl peptide - ENSDARP00000125927
NCBI entrez gene - 393534     See in Manteia.
swissprot - Q6PHF1
ZFIN ID - ZDB-GENE-040426-1479
Ensembl - ENSDARG00000053129
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CARHSP1ENSGALG00000042981Gallus gallus
 Q9Y2V2ENSG00000153048Homo sapiens
 Q9CR86ENSMUSG00000008393Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CSDC2 (1 of many) / cold shock domain containing C2 / CSDC2* / Q9Y534*ENSDARG0000010016754
csdc2a / cold shock domain containing C2, RNA binding a / CSDC2* / Q9Y534* / Q91YQ3* / cold shock domain containing C2* / Cold shock domain-containing protein C2 *ENSDARG0000004132354


Protein motifs (from Interpro)
Interpro ID Name
 IPR002059  Cold-shock protein, DNA-binding
 IPR011129  Cold shock domain
 IPR012340  Nucleic acid-binding, OB-fold
 IPR019844  Cold-shock conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0043488 regulation of mRNA stability IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr