ENSGALG00000042981


Gallus gallus

Features
Gene ID: ENSGALG00000042981
  
Biological name :CARHSP1
  
Synonyms : calcium regulated heat stable protein 1 / CARHSP1
  
Possible biological names infered from orthology : Q9CR86 / Q9Y2V2
  
Species: Gallus gallus
  
Chr. number: 14
Strand: 1
Band:
Gene start: 10077021
Gene end: 10104332
  
Corresponding Affymetrix probe sets: GgaAffx.21427.1.S1_at (Chicken Array)   GgaAffx.4562.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000055183
NCBI entrez gene - 416640     See in Manteia.
RefSeq - XM_414938
swissprot - A0A1D5PQL8
Ensembl - ENSGALG00000042981
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 carhsp1ENSDARG00000053129Danio rerio
 Q9Y2V2ENSG00000153048Homo sapiens
 Q9CR86ENSMUSG00000008393Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CSDC2 / cold shock domain containing C2 / Q91YQ3* / Q9Y534* / Cold shock domain-containing protein C2 *ENSGALG0000003010164


Protein motifs (from Interpro)
Interpro ID Name
 IPR002059  Cold-shock protein, DNA-binding
 IPR011129  Cold shock domain
 IPR012340  Nucleic acid-binding, OB-fold
 IPR019844  Cold-shock conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0043488 regulation of mRNA stability IEA
 cellular_componentGO:0000177 cytoplasmic exosome (RNase complex) IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0043186 P granule IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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